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@MICA-MNI

MICA-MNI

Multimodal Imaging and Conenctome Analysis Lab at the Montreal Neurological Institute.

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  1. BrainSpace BrainSpace Public

    BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

    Python 240 82

  2. BrainStat BrainStat Public

    A statistics and context decoding toolbox for neuroimaging.

    Jupyter Notebook 115 25

  3. ENIGMA ENIGMA Public

    The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macro…

    Jupyter Notebook 170 45

  4. micaopen micaopen Public

    Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute

    Jupyter Notebook 82 44

  5. micapipe micapipe Public

    micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

    Shell 115 39

  6. z-brains z-brains Public

    z-brains: open software for brain lesion lateralization and localization

    Python 12 6

Repositories

Showing 10 of 31 repositories
  • micaflow Public

    The easy way to process MRI data

    MICA-MNI/micaflow’s past year of commit activity
    Python 1 0 2 0 Updated Jan 6, 2026
  • hippomaps Public Forked from jordandekraker/hippomaps

    Toolbox and data repository for hippocampal surface data

    MICA-MNI/hippomaps’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 7 0 0 Updated Jan 6, 2026
  • 2025_in-vivo_tauPET-mk6240_TLE Public

    This repository provides code for analyzing in-vivo tau aggregation in temporal lobe epilepsy (TLE) using 18F-MK6240 PET. It includes preprocessing, statistical analysis, and visualization scripts to assess tau deposition, connectivity patterns, and cognitive associations in TLE patients and controls.

    MICA-MNI/2025_in-vivo_tauPET-mk6240_TLE’s past year of commit activity
    Jupyter Notebook 3 MIT 0 1 0 Updated Jan 4, 2026
  • ENIGMA Public

    The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

    MICA-MNI/ENIGMA’s past year of commit activity
    Jupyter Notebook 170 BSD-3-Clause 45 9 0 Updated Dec 18, 2025
  • MRI-Histology_framework_for_SWM_architecture Public

    This repository contains analysis notebooks for studying SWM microstructure using post-mortem and in-vivo datasets. It includes preprocessing, statistical analysis, and visualization scripts to assess intensity profiles from all datasets, gradients from qMRI, and their correlations with cortical geometry, functional and structural connectivity.

    MICA-MNI/MRI-Histology_framework_for_SWM_architecture’s past year of commit activity
    Jupyter Notebook 3 MIT 2 0 0 Updated Dec 11, 2025
  • micapipe Public

    micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

    MICA-MNI/micapipe’s past year of commit activity
    Shell 115 GPL-3.0 39 41 (3 issues need help) 8 Updated Dec 10, 2025
  • z-brains Public

    z-brains: open software for brain lesion lateralization and localization

    MICA-MNI/z-brains’s past year of commit activity
    Python 12 BSD-3-Clause 6 9 0 Updated Dec 7, 2025
  • BrainSpace Public

    BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

    MICA-MNI/BrainSpace’s past year of commit activity
    Python 240 BSD-3-Clause 82 3 4 Updated Dec 3, 2025
  • LAMAReg Public

    Label Augmented Modality Agnostic Registration (LAMAReg) is a MRI resgistration technique combines deep learning-based segmentation and numerical solutions to generate precise non linear warpfields

    MICA-MNI/LAMAReg’s past year of commit activity
    Python 8 MIT 2 6 1 Updated Dec 2, 2025
  • hippunfold Public Forked from khanlab/hippunfold

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    MICA-MNI/hippunfold’s past year of commit activity
    Python 0 MIT 21 0 0 Updated Nov 27, 2025
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