Update to TASBE 5#1

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jakebeal wants to merge 934 commits intoLivingComputingProject:masterfrom

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Commits on Jan 21, 2019

Commits on Jan 22, 2019

add validation that nothing is dropped when setPemDropThreshold is zero
jakebeal
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Merge pull request #382 from TASBE/features/pemdroptest
jakebeal
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Commits on Jan 24, 2019

add sanitization to peak ID channel
jakebeal
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don't create a legend in octave if there aren't any data points: it bombs
jakebeal
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Commits on Jan 27, 2019

Commits on Jan 28, 2019

Commits on Jan 29, 2019

Commits on Feb 4, 2019

use the warning switching facility to switch notify/succeed/skip
jakebeal
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Merge pull request #394 from TASBE/fix/issue.393
jakebeal
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fix typo
jakebeal
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Commits on Feb 5, 2019

Commits on Feb 6, 2019

Merge pull request #396 from TASBE/fix/issue.143
jakebeal
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Commits on Feb 14, 2019

more informative warnings in fca_readfcs
jakebeal
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Fix issue #400
jakebeal
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Merge pull request #401 from TASBE/fix/issue.400
jakebeal
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turn off channel disambiguation warning
jakebeal
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Merge pull request #403 from TASBE/fix/issue.384
jakebeal
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Commits on Feb 26, 2019

Addressed issues #398 and #397
coverney
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Changed JSON encoding and decoding to work with Octave
coverney
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Fixed empty string problem
coverney
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Made fca_readcsv compatible with octave
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Commits on Feb 27, 2019

set stem name before running ```per_color_constitutive_analysis```
coverney
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Merge branch 'develop' into coverney.issue397
Cassandra Overney
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Copied original test_fca_reading file
coverney
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typo fix
jakebeal
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restored use of flow.maxEvents
jakebeal
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Merge pull request #408 from TASBE/coverney.issue397
jakebeal
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Commits on Feb 28, 2019

Commits on Mar 3, 2019

Commits on Mar 5, 2019

Added structs to JSON header
coverney
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Added JSON header from tutorial to test directory
coverney
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Fixed little typo in ```test_csv_reading```
coverney
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Addressed issue #407
coverney
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Commits on Mar 12, 2019

Commits on Mar 13, 2019

Fixed batch analysis octave bug
coverney
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Fixed test_batch_output_excel octave bug
coverney
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Merge pull request #418 from TASBE/coverney.issue407
jakebeal
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Commits on Mar 20, 2019

Created DataFile objects and updated tests
coverney
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Commits on Mar 25, 2019

Commits on Mar 26, 2019

Fixed getExcelFilename bug when making colormodel from excel
coverney
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Merge branch 'develop' into coverney.issue411
coverney
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Fixed bug when writing point cloud files
coverney
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Fixed logical operator comparison bug
coverney
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Commits on Mar 28, 2019

Commits on Apr 2, 2019

Addressed requested changes
coverney
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Merge pull request #424 from TASBE/coverney.issue411
jakebeal
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Addressed issue #425
coverney
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Merge branch 'develop' into coverney.issue411
coverney
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Fixed csv reading test
coverney
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Commits on Apr 9, 2019

make autofluorescence models use TASBEconfig, refactor
jakebeal
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update autofluorescence model documentation
jakebeal
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Commits on Apr 10, 2019

Addressed #421 and #409
coverney
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Commits on Apr 11, 2019

Merge pull request #437 from TASBE/coverney.issue421
jakebeal
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Commits on Apr 13, 2019

improve clarity
jakebeal
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Update README to fix #124
jakebeal
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Commits on Apr 14, 2019

Commits on Apr 15, 2019

finished figure resizing, expansion of TASBEConfig
jakebeal
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Merge branch 'develop' into fix/issue.429
jakebeal
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fix bad merge
jakebeal
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remove obsolete commands
jakebeal
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working on handling of derived channels
jakebeal
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updated obsolete AutofluorescenceModel constructor
jakebeal
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allow derived channels for color models
jakebeal
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Merge pull request #440 from TASBE/fix/issue.429
jakebeal
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Merge branch 'develop' into fix/issue.428
jakebeal
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generalized to enable reading of synthetic channels
jakebeal
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fix bad pointer in test
jakebeal
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deal with octave vs. matlab difference in handling mean([])
jakebeal
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fix stupid typo
jakebeal
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octave std doesn't do weighting, made a weighted version
jakebeal
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Merge pull request #441 from TASBE/fix/issue.428
jakebeal
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Commits on Apr 16, 2019

Commits on Apr 17, 2019

Added test_colormodel_csv
coverney
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Fixed error with pathnames
coverney
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Updated colormodel csv filenames
coverney
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removed test_colormodel_warnings
coverney
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Commits on Apr 22, 2019

Commits on Apr 24, 2019

Commits on Apr 26, 2019

Commits on Apr 28, 2019

Commits on Apr 29, 2019

Commits on Apr 30, 2019

Addressed issue #359
coverney
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Made suggested changes
coverney
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Fixed gating test
coverney
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Merge pull request #456 from TASBE/coverney.issue359
jakebeal
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Commits on May 6, 2019

Addressed issue #360
coverney
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Merge branch 'develop' into coverney.issue360
Cassandra Overney
authored
Merge pull request #457 from TASBE/coverney.issue360
jakebeal
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avoid false "high gating variation" warnings triggered by not using a gate
jakebeal
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Commits on May 13, 2019

Added print name checking to read csv
coverney
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Added tests for issue #460
coverney
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List channel options when channel name not found
coverney
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Commits on May 14, 2019

Commits on Jun 5, 2019

fixed a matlab reading bug, partial fix of #467
jakebeal
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modification of colormodel_csv.json to exercise issues #466 and #467
jakebeal
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Commits on Jun 8, 2019

Addressed issues #467 and #466
coverney
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Added a more foolproof solution to issues #467 and #466
coverney
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Commits on Jun 9, 2019

Merge pull request #468 from TASBE/coverney.issue467
jakebeal
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Commits on Jun 11, 2019

update citation in author and readme file
jakebeal
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Commits on Jun 14, 2019

Merge branch 'master' of https://github.com/TASBE/TASBEFlowAnalytics
jakebeal
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Commits on Jun 22, 2019

Commits on Jun 23, 2019

Commits on Jun 24, 2019

update to next alpha version
jakebeal
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Commits on Jun 29, 2019

Addressed issue #470
coverney
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Fixed test because added Config to bottom of plots
coverney
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Merge pull request #477 from TASBE/coverney.issue470
jakebeal
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Commits on Sep 4, 2019

add ACS SynBio TASBE publication reference
jakebeal
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Commits on Sep 5, 2019

Commits on Oct 2, 2019

Updated README
Cassandra Overney
authored
Update README
Cassandra Overney
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Merge pull request #485 from TASBE/coverney.issue481
jakebeal
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Addressed issues #480 and #482
coverney
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Commits on Oct 3, 2019

Merge pull request #486 from TASBE/coverney.issue482+480
jakebeal
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Commits on Dec 14, 2019

Edited TASBEConfig and TASBESession for #292
Cassandra Overney
committed

Commits on Dec 15, 2019

Wrote TASBESession error_silent function for excel interface
coverney
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Commits on Dec 16, 2019

Commits on Jan 14, 2020

Commits on Mar 12, 2020

added SpheroTech URCP-38-2K lot AL02
jakebeal
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Commits on May 8, 2020

Commits on Jul 22, 2020

add link to iGEM
jakebeal
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Commits on Sep 11, 2020

fix FCS read handling of very small files
jakebeal
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Commits on Sep 12, 2020

Commits on Sep 17, 2020

add a second test
Jake Beal
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Commits on Sep 18, 2020

fix test 2
Jake Beal
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additional challenging test
Jake Beal
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Commits on Sep 23, 2020

Commits on Oct 16, 2020

Commits on Nov 24, 2020

Commits on Feb 17, 2021

Commits on Mar 3, 2021

Commits on Mar 4, 2021