remove requirements.txt, declare all deps in pyproject.toml

.github/workflows/test.yml

@@ -31,7 +31,6 @@ jobs:
               - '.github/CODEOWNERS'
             code:
               - '**/*.py'
-              - 'requirements.txt'
               - 'pyproject.toml'
               - 'pytest.ini'
               - 'mcp.json.example'
@@ -48,8 +47,7 @@ jobs:
         if: steps.changes.outputs.code == 'true'
         run: |
           python -m pip install --upgrade pip
-          pip install -r requirements.txt
-          pip install -e .
+          pip install -e ".[dev]"
       - name: Check generated edge navigation doc
         if: steps.changes.outputs.code == 'true'
         run: python scripts/generate_edge_navigation.py --check

pyproject.toml

@@ -34,9 +34,17 @@ dependencies = [
     "sentence-transformers>=5.4.0,<6",
     "tree-sitter>=0.25.2,<0.26",
     "tree-sitter-java>=0.23.5,<0.24",
+    "pydantic>=2.0,<3",
     "unidiff>=0.7.3,<1",
 ]
 
+[project.optional-dependencies]
+dev = [
+    "pytest>=7",
+    "pytest-asyncio>=0.21",
+    "ruff>=0.4",
+]
+
 [project.urls]
 Homepage = "https://github.com/HumanBean17/java-codebase-rag"
 Repository = "https://github.com/HumanBean17/java-codebase-rag"

tests/test_agent_skills_static.py

@@ -167,25 +167,25 @@ def test_edge_type_refs_are_valid(self):
 class TestBodyStructure:
     """Skill body must contain key sections."""
 
-    def test_has_canonical_workflow(self):
+    def test_has_workflow_patterns(self):
         _, body = _read_skill()
-        assert "## Canonical workflow" in body, "SKILL.md missing '## Canonical workflow'"
+        assert "## Workflow Patterns" in body, "SKILL.md missing '## Workflow Patterns'"
 
-    def test_has_decision_tree(self):
+    def test_has_decision_framework(self):
         _, body = _read_skill()
-        assert "## Decision tree" in body, "SKILL.md missing '## Decision tree'"
+        assert "## Decision Framework" in body, "SKILL.md missing '## Decision Framework'"
 
     def test_has_recovery_playbook(self):
         _, body = _read_skill()
-        assert "## Recovery playbook" in body, "SKILL.md missing '## Recovery playbook'"
+        assert "## Recovery Playbook" in body, "SKILL.md missing '## Recovery Playbook'"
 
     def test_has_edge_taxonomy(self):
         _, body = _read_skill()
         assert "## Edge taxonomy" in body, "SKILL.md missing '## Edge taxonomy'"
 
-    def test_has_navigation_patterns(self):
+    def test_has_tool_inventory(self):
         _, body = _read_skill()
-        assert "## Common navigation patterns" in body, "SKILL.md missing '## Common navigation patterns'"
+        assert "## Tool Inventory" in body, "SKILL.md missing '## Tool Inventory'"
 
     def test_has_reasoning_preamble(self):
         _, body = _read_skill()