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Fix UnboundLocalError error in onerun_SEIR #585

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Merged
TimothyWillard merged 1 commit into from
Jul 24, 2025
Merged

Fix UnboundLocalError error in onerun_SEIR #585

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12 changes: 5 additions & 7 deletions flepimop/gempyor_pkg/src/gempyor/seir.py
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Original file line number Diff line number Diff line change
Expand Up @@ -381,10 +381,11 @@ def onerun_SEIR(
)

with Timer("onerun_SEIR.postprocess"):
out_df = states2Df(modinf, states)
if modinf.write_csv or modinf.write_parquet:
write_spar_snpi(sim_id2write, modinf, p_draw, npi)
out_df = write_seir(sim_id2write, modinf, states)
return out_df
write_seir(sim_id2write, modinf, out_df)
return out_df


def _onerun_SEIR_with_random_seed(
Expand Down Expand Up @@ -420,7 +421,7 @@ def _onerun_SEIR_with_random_seed(
)


def run_parallel_SEIR(modinf: ModelInfo, config, *, n_jobs=1):
def run_parallel_SEIR(modinf: ModelInfo, config, *, n_jobs=1) -> None:
"""
Run SEIR simulations in parallel.

Expand Down Expand Up @@ -538,11 +539,8 @@ def write_spar_snpi(sim_id: int, modinf: ModelInfo, p_draw, npi):
)


def write_seir(sim_id, modinf: ModelInfo, states):
# print_disk_diagnosis()
out_df = states2Df(modinf, states)
def write_seir(sim_id, modinf: ModelInfo, out_df):
modinf.write_simID(ftype="seir", sim_id=sim_id, df=out_df)

return out_df


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