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ChiShengChen/README.md

Hi there πŸ‘‹, I'm Chi-Sheng "Michael" Chen

AI Researcher | Time-Series + Biomedical AI + Quantum ML
Harvard Medical School & BIDMC, ex-OpenAI, ex-MediaTek, ex-Max Planck Institute
Passionate about transforming data into intelligence 🧠⚑️


πŸš€ About Me

  • πŸ§ͺ Researcher at Harvard Medical School & BIDMC (AI x Surgical Informatics).
  • 🧠 Building the EEG Foundation Model for brain signal understanding (AI x EEG x Psychiatry).
  • πŸ” DeFAI Researcher at Omnis Labs (AI x DeFi x Finance).
  • 🌱 Currently exploring Quantum Machine Learning, Quant Finance, DeFAI and Brain-Computer Interfaces.
  • πŸ“ Reviewer for ICML, KDD, MICCAI, ICASSP, IEEE TPAMI, TNNLS, and more.
  • πŸŽ“ Google Scholar | Website
    Google Scholar H-index i10-index GitHub Stars

πŸ“„ Selected Publications

Year Venue Title Citations
2025 PLoS ONE Res-VMamba: Fine-Grained Food Category Visual Classification Using Selective State Space Models with Deep Residual Learning 53
2024 IEEE SiPS QEEGNet: Quantum Machine Learning for Enhanced Electroencephalography Encoding 32
2024 arXiv Mind's Eye: Image Recognition by EEG via Multimodal Similarity-Keeping Contrastive Learning 22
2023 J. Affective Disorders Prediction of Antidepressant Responses to Non-Invasive Brain Stimulation Using Frontal EEG Signals 18
2023 Ann. Biomed. Eng. Intraoperative Detection of Surgical Gauze Using Deep Convolutional Neural Network 17
2025 arXiv QASA: Quantum Adaptive Self-Attention for Quantum Transformer Models 17
2025 ICASSP Quantum Multimodal Contrastive Learning Framework 16
2025 IEEE QCE Quantum RL Trading Agent for Sector Rotation in the Taiwan Stock Market 5

πŸ“Š Full list β†’ Google Scholar Β· Citations recorded on 2026-03-19


πŸ† Awards & Honors

Year Award
2026 NVIDIA GTC 2026 β€” Top 8 Finalist, GPU-Accelerated Chinese Brain-to-Text Interface (NVIDIA H100)
2026 Berkeley RDI AgentX-AgentBeats β€” 3rd Place in Healthcare Agent (1,300+ teams worldwide)
2023 20th National Innovation Award β€” Certificate in Clinical Research category
2019 International Blockchain Olympiad (IBCOL) β€” World Finalist (100+ teams)
2017 Microsoft Imagine Cup β€” 2nd Place in Taiwan
2016 iGEM Competition β€” World Gold Medal + Best Applied Design + Best Part Collection + Best Presentation (300+ teams)

πŸ› οΈ Tech Stack


πŸ”¬ Flagship Projects

  • Res-VMamba Stars
    Fine-grained food classification using state space models with deep residual learning. PLoS ONE, 53 citations.

  • MUSE EEG Stars
    Mind's Eye: EEG-based image recognition using multimodal similarity-keeping contrastive learning. 22 citations.

  • QEEGNet Stars
    Hybrid quantum-classical encoder model for EEG representation learning. IEEE SiPS 2024, 32 citations.

  • QASA Stars
    Quantum Adaptive Self-Attention for Quantum Transformer Models. 17 citations.

  • QCL Stars Quantum Multimodal Contrastive Learning for EEG-image analysis. ICASSP 2025, 16 citations.

  • LCM β€” Large Cognition Model Pretrained EEG Foundation Model for brain signal understanding. 14 citations.

  • FreqLens Stars Interpretable Frequency Attribution for Time Series Forecasting.

  • Necomimi
    EEG-to-Image generation using diffusion models with neural cognitive alignment. 9 citations.



πŸ“Œ All Projects (click to expand)

πŸ–ΌοΈ Computer Vision

  • DL-based Eye Tracking System
    The new Gaze Heatmap System provides advanced gaze tracking with ETH-XGaze as the default model (best accuracy, supports MPS GPU acceleration).
  • Webcam Gaze Tracker, Gaze Label Tool & Video Annotation Tool
    A web application that uses your webcam to track your eye gaze in real-time, featuring: Gaze-based Image Labeling powered by SAM (Segment Anything Model), Video Annotation Mode for recording gaze and audio commentary on videos. Built with WebGazer.js, ONNX Runtime Web, and Vite.
  • FewShot3DBrain
    Frozen FOMO backbone + task-specific LoRA adapters for sequential few-shot continual learning on tumor segmentation (BraTS) and brain age regression (IXI).
  • Food2K-TW101 Stars Comprehensive benchmark of fine-grained food classification models on Food2K, Taiwanese Food-101, and Food2K-TW datasets.
  • PyTorch Fine-Grained Classification Template PyTorch fine-grained visual classification template implementing multiple architectures (MetaFormer, PRENet, CMAL-Net) for fine-grained image recognition tasks.

🧠 EEG & Multimodal AI

πŸ₯ Surgical / Medical AI

  • NTQIP NEI-6 Prediction
    Decision-tree-based trauma outcome prediction on the TQIP NEI-6 dataset using demographics, GCS, vitals, and injury mechanism features.
  • TQIP NEI-6 Local Feature Analysis
    Local feature engineering and analysis pipeline for TQIP NEI-6 trauma prediction.
  • Trauma Activation Matcher
    Automated matching of trauma activation registry data with EMS audio recordings using time-window, demographics, and injury pattern matching.

⏳ Time-series Deep Learning

  • BTSPFormer
    Transformer-based time-series model inspired by behavioral-timescale synaptic plasticity (BTSP), designed for predictive learning on damped signals.
  • DeFi Benchmark on Curve.fi
    Predict Curve Pool Virtual Price changes using Random Forest, LSTM, Transformer and QNN (Quantum Neural Network) models.
  • Curve Pool Intelligent Prediction System Real-time prediction of Curve pool Virtual Price changes, intelligently identifying the best investment opportunities.
  • Time-Series Forecasting Benchmark Framework Curated benchmark and evaluation framework for time-series forecasting, aggregating 9+ dataset/model repos (GiftEval, Chronos, UniTS, TFB, BasicTS, etc.).

βš›οΈ Quantum Machine Learning (QML)

  • Quantum MNIST Diffusion
    Quantum-enhanced diffusion models for image generation, bridging medical imaging and quantum computing.
  • QuantumRWKV
    Quantum-Enhanced Channel Mixing in RWKV Models for Time Series Forecasting.
  • Vision-QRWKV
    Vision QRWKV: Exploring Quantum-Enhanced RWKV Models for Image Classification.
  • QRL for Industry Sector Rotation
    QCE25 Quantum Reinforcement Learning agent for industry sector rotation in the stock market.
  • QML for Text Gen
    Quantum text generation using QKSAN, QRWKV, and QASA models with comprehensive evaluation pipeline.
  • ViQASA β€” QASA Vision Transformer
    Hybrid classical-quantum Vision Transformer with quantum-inspired attention mechanism using Pennylane, evaluated on MNIST and Fashion-MNIST.
  • Diffusion QASA
    Applying Quantum Adaptive Self-Attention (QASA) to diffusion models.
  • Quantum Attention
    Exploration of quantum attention mechanisms for neural network architectures.
  • Quantum Molecular Prediction
    Quantum and classical regression models (QNN, QASA, Transformer, XGBoost, etc.) for predicting molecular properties.

πŸ€– EEG Survey & Control Systems

  • EEG Dataset Survey Paper Stars
    A survey of public EEG datasets for machine learning and BCI.
  • Psycho Gundam
    EEG-based real-time robotic control system using EMOTIV+ and deep learning.
  • Opensource EEG Dataset
    Curated table of open-source EEG datasets with detailed specs (montage, sampling rate, subjects, classes) for ML and BCI research.

🈡 Natural Language Processing, LLM Related

  • ctext.org Chinese Poem Crawler
    For scraping Chinese classical texts from ctext.org.
  • Chinese BERT Fine-tune
    A BERT Chinese model fine-tuning project based on DeepSpeed framework, trained on TMMLU+ multi-domain Chinese Q&A dataset.
  • Whisper Audio Translate Batch audio transcription pipeline using Whisper (large-v2/v3/turbo) for EMS audio data processing.
  • EMS Audio Synthesis Pipeline Synthetic speech generation pipeline for EMS radio call ASR fine-tuning, combining LLM text generation, multi-engine TTS synthesis (XTTS/Bark/Edge), and radio-noise augmentation.
  • IELTS Speaking & Writing Practice Full-featured IELTS practice web app with timed recording, local Whisper ASR transcription, automatic band score estimation, pronunciation assessment, and PDF export.

πŸ§ͺ Machine/Deep Learning Tutorial

  • Python 101 in zh
    Simple python tutorial for beginners in Chinese.
  • PyTorch Medical Image Tutorial Stars
    Three deep learning models (VGG16, ResNet18, ViT) on the PathMNIST dataset.
  • Deep Learning Introduction Stars
    A step-by-step PyTorch tutorial for deep learning beginners.
  • LLM Finetune Tutorial
    Comprehensive examples and scripts for fine-tuning LLMs using DeepSpeed, NVIDIA NeMo, and Unsloth.
  • Soft Prompt VLM Fine-tuning
    Tutorial on parameter-efficient fine-tuning of Vision-Language Models using learnable soft prompts (~600K params vs full 124M).
  • Text-Image Search with CLIP
    Text-to-image and image-to-image search system based on CLIP with fine-tuning support and multiple dataset integration.
  • Laser Physics AI Tutor
    RAG-based AI teaching assistant for NYCU laser physics course, featuring 8 learning modes, built with Gemini 2.5 Flash, Supabase pgvector, and Vercel AI SDK.

πŸ”— Blockchain & DeFi

  • Solana Demo Tutorial
    A basic Solana smart contract demo using Rust and TypeScript, deployed on devnet.
  • Solana PDA Practice
    A simple Solana program that manages user data accounts with messages that can be updated through PDA.
  • Anchor Solana PDA
    A simple Solana program built with the Anchor framework demonstrating the initialization of a Program Derived Address (PDA).
  • Blockchain from Scratch
    A practice project building blockchain systems from the ground up.
  • Uniswap V3 AMM Performance Backtesting System
    A backtesting system for Uniswap V3-style AMM performance on Katana L2 chain, using historical event data from the WBTC-USDC pool for backtest analysis.
  • Quantum vs Classical ML in AMM Trading Strategies
    Quantum vs Classical ML in AMM Trading Strategies.
  • Compass DeFAI DEX AI-driven DEX protocol for DeFAI (Decentralized Finance + AI).
  • AMM LP Simulator Interactive AMM liquidity provider simulator with real-time impermanent loss calculation, dual-perspective P&L, compounding fee yield, and farming reward depreciation modeling.
  • Project Compass Web3 DeFi AI-based portfolio and risk management platform integrating classical and quantum AI models for portfolio optimization across protocols (LIDO, AAVE, Uniswap, etc.).

πŸ“ˆ Quant Trading

  • Option Simulator
    A mathematical model-based American options backtesting system that simulates option prices using mathematical models rather than relying on historical market data.
  • Smart Money Concept Demo
    Interactive Smart Money Concept (SMC) analysis tool built with Gemini AI and TypeScript.
  • Curve AI Backend FastAPI backend service for Curve Finance pool metrics syncing, historical APY data tracking, and strategy event management with Celery workers and Prometheus monitoring.
  • Aster DEX Trading Bot Flask-based trading bot for Aster DEX, implementing normal grid, logarithmic grid, and volume-based automated trading strategies.

πŸ€– AI Agent & Applications

  • Dao-Agent Claude Code Skill that generates structured agent prompts using Taoist ritual metaphors, with 6 template types, multi-agent workflows, prompt linting, and token estimation.
  • Shikigami Claude Code Skill inspired by Japanese onmyoji mythology for generating agent prompts, featuring 6 agent templates, 5 multi-agent formations, and composable enhancement modules.
  • Moltbook AI Temple Autonomous AI agent on Moltbook social platform simulating a traditional Taiwanese temple, providing Claude-powered fortune telling, divination, and 24/7 automated community engagement.
  • EQ Grader Local AI-powered grading system for elementary school EQ worksheets, using Ollama (Qwen 2.5 14B) with a three-stage evaluation pipeline, running entirely on Apple Silicon.

🌾 IoT Application


🧠 Let's Connect

Pinned Loading

  1. ResVMamba ResVMamba Public

    The official repository implement of Res-VMamba: Fine-Grained Food Category Visual Classification Using Selective State Space Models with Deep Residual Learning.

    Python 82 4

  2. MUSE_EEG MUSE_EEG Public

    The official implement of Mind's eye: image recognition by EEG via multimodal similarity-keeping contrastive learning.

    Python 43 2

  3. Quantum_MNIST_Diffusion Quantum_MNIST_Diffusion Public

    The official implement of "Quantum Generative Models for Image Generation: Insights from MNIST and MedMNIST. A novel approach to image generation using quantum-enhanced diffusion models".

    Python 3 1

  4. EEG-Datasets EEG-Datasets Public

    Forked from meagmohit/EEG-Datasets

    A list of all public EEG-datasets.

    Shell 15 4

  5. Deep_learning_introducrion Deep_learning_introducrion Public

    This tutorial is designed for beginners of deep learning, introducing the basics of PyTorch to advanced applications step by step.

    Python 12 1

  6. pytorch_deep_learning_medimg_tutorial pytorch_deep_learning_medimg_tutorial Public

    This project simply implements three common deep learning models (VGG16, ResNet18, ViT) for medical image classification tasks using the PathMNIST dataset.

    Python 20 3