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RAREMETALWORKER http://genome.sph.umich.edu/wiki/RAREMETALWORKER
ProteoWizard
gcta http://cnsgenomics.com/software/gcta/
SearchGUI
SAINTq
ProteinProphet http://proteinprophet.sourceforge.net/
PeptideShaker
PeptideProphet http://peptideprophet.sourceforge.net/
OpenMS
TPP DatabaseParser