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Add container building workflows

Status: Open.

#86 In BCCDC-PHL/routine-sequence-qc;

· dfornika opened on Jul 18, 2025

Add support for directly supplying SampleSheet with --samplesheet param

Status: Open.

#83 In BCCDC-PHL/routine-sequence-qc;

· dfornika opened on Mar 12, 2025

Count PhiX and other reads in Undetermined files

Status: Open.

#82 In BCCDC-PHL/routine-sequence-qc;

· dfornika opened on Feb 9, 2024

Revert support for new MiSeq directory structure

Status: Open.

#66 In BCCDC-PHL/routine-sequence-qc;

· dfornika opened on Jan 10, 2023

Automatically determine instrument type if not given

Status: Open.

#60 In BCCDC-PHL/routine-sequence-qc;

· dfornika opened on Mar 28, 2022

Evaluate an alternative method for estimating depth of coverage

Status: Open.

#58 In BCCDC-PHL/routine-sequence-qc;

· dfornika opened on Mar 2, 2022

Use bracken MultiQC module

Status: Open.

#8 In BCCDC-PHL/routine-sequence-qc;

· dfornika opened on Feb 17, 2021

validExitStatus directive is deprecated

Status: Open.

#7 In BCCDC-PHL/routine-sequence-qc;

· dfornika opened on Feb 17, 2021