bqtools-0.5.6

What's Changed

• Feat/export info as json and support multiple input files by @noamteyssier in #175

Full Changelog: bqtools-0.5.5...bqtools-0.5.6

bqtools-0.5.5

What's Changed

• Bqtools 0.5.5 by @noamteyssier in #173
  • handle correct mate matching with pattern redistribution
  • update rand dependency
  • update sassy version
    • handles multiple patterns using internal sassy api

Full Changelog: bqtools-0.5.4...bqtools-0.5.5

bqtools-0.5.4

What's Changed

• Change sassy searcher by @noamteyssier in #165
• Autodetermine fixed regex by @noamteyssier in #166
• Feat/support grep pattern files from fasta by @noamteyssier in #169
• Bqtools 0.5.4 by @noamteyssier in #170

Full Changelog: bqtools-0.5.1...bqtools-0.5.4

bqtools-0.5.1

What's Changed

• Integrate cbq by @noamteyssier in #156
• fix: make interleaved conflict with paired by @noamteyssier in #159
• 157 grep over subset of the data by @noamteyssier in #160
• feat: added a claude md by @noamteyssier in #162
• Add percentage to grep by @noamteyssier in #163
• Dev 0.5.1 by @noamteyssier in #164

Full Changelog: bqtools-0.4.15...bqtools-0.5.1

bqtools-0.4.15

What's Changed

• collate collections of records by @noamteyssier in #151
• Refactor encode for clarity by @noamteyssier in #152
• chore: include paired in count by @noamteyssier in #153
• Development by @noamteyssier in #154

Full Changelog: bqtools-0.4.14...bqtools-0.4.15

bqtools-0.4.14

What's Changed

• 148 upgrade to binseq 0.8.1 by @noamteyssier in #149
• Paired pipe development by @noamteyssier in #150

Full Changelog: bqtools-0.4.12...bqtools-0.4.14

bqtools-0.4.12

What's Changed

Large performance gains for VBQ with https://github.com/ArcInstitute/binseq/releases/tag/v0.7.8

• 146 update binseq version by @noamteyssier in #147

Full Changelog: bqtools-0.4.11...bqtools-0.4.12

bqtools-0.4.11

What's Changed

• 140 gate htslib features behind a feature flag by @noamteyssier in #142

Full Changelog: bqtools-0.4.10...bqtools-0.4.11

bqtools-0.4.10

What's Changed

• 128 only report three columns for pattern matching by @noamteyssier in #130
• 129 match in sequence with range by @noamteyssier in #131
• Development by @noamteyssier in #132
• Compile single patterns on or logic by @noamteyssier in #135
• 134 improve pattern counting on fixed strings with aho corasick by @noamteyssier in #136
• Development by @noamteyssier in #137

Full Changelog: bqtools-0.4.8...bqtools-0.4.9

bqtools-0.4.8

What's Changed

• 116 support fuzzy grep with sassy by @noamteyssier in #118
• 119 gate fuzzy matching behind feature flag by @noamteyssier in #120
• 58 implement a pattern count feature by @noamteyssier in #121
• 122 consolidate grep filtering backend by @noamteyssier in #123
• 117 accept a file with grep by @noamteyssier in #124
• Better testing on different matching conditions by @noamteyssier in #126
• Development by @noamteyssier in #127

Full Changelog: bqtools-0.4.5...bqtools-0.4.8