Update tsv, md and png files

Author: actions-user

_data/WP3981-datanodes.tsv

@@ -1,6 +1,6 @@
 Label	Type	Identifier	Comment	Ensembl	NCBI gene	HGNC	UniProt	Wikidata	ChEBI	InChI	PubChem	ChemSpider	HMDB	KEGG	LipidMaps
 DNA	Metabolite	chebi:16991	""					wikidata:Q7430	chebi:16991					kegg.compound:C00039	
-PIP3	Metabolite	chebi:16618	""					wikidata:Q28797898	chebi:16618	inchikey:RQQIRMLGKSPXSE-UQPICLANSA-N		chemspider:34980938	hmdb:HMDB0004249	kegg.compound:C05981	
+PIP3	Metabolite	chebi:16618	""					wikidata:Q130305209;wikidata:Q28797898	chebi:16618	inchikey:RQQIRMLGKSPXSE-UQPICLANSA-N		chemspider:34980938	hmdb:HMDB0004249	kegg.compound:C05981	lipidmaps:LMGP09010000
 MAP2K1	GeneProduct	ensembl:ENSG00000169032	""	ensembl:ENSG00000169032	ncbigene:5604	hgnc.symbol:MAP2K1	uniprot:B4DFY5;uniprot:H3BRW9;uniprot:A4QPA9;uniprot:Q02750								
 CREBBP	GeneProduct	ensembl:ENSG00000005339	""	ensembl:ENSG00000005339	ncbigene:1387	hgnc.symbol:CREBBP	uniprot:Q92793;uniprot:I3L466;uniprot:A0A1B0GUU0;uniprot:I3L3I5;uniprot:I3L0Q1;uniprot:I3L293								
 NFKB1	GeneProduct	ensembl:ENSG00000109320	""	ensembl:ENSG00000109320	ncbigene:4790	hgnc.symbol:NFKB1	uniprot:A0A494C157;uniprot:A0A494C1E9;uniprot:P19838;uniprot:D6RC45;uniprot:D6RH30								

_pathways/WP2291.md

@@ -1,9 +1,5 @@
 ---
 annotations:
-- id: PW:0000610
-  parent: disease pathway
-  type: Pathway Ontology
-  value: urinary bladder cancer pathway
 - id: DOID:11054
   parent: disease of cellular proliferation
   type: Disease Ontology
@@ -12,6 +8,10 @@ annotations:
   parent: disease pathway
   type: Pathway Ontology
   value: cancer pathway
+- id: PW:0000610
+  parent: disease pathway
+  type: Pathway Ontology
+  value: urinary bladder cancer pathway
 authors:
 - Anwesha
 - MaintBot
@@ -28,15 +28,15 @@ communities:
 description: Example of the Rab27 cluster. The Rab27 cluster is comprised of the two
   RAB27 isoforms (RAB27A and RAB27B), the GEF MADD, the GAP TBC1D10A and 12 effector
   proteins
-last-edited: 2021-05-22
+last-edited: 2025-02-24
 ndex: 3a31e185-8b64-11eb-9e72-0ac135e8bacf
 organisms:
 - Homo sapiens
 redirect_from:
 - /index.php/Pathway:WP2291
 - /instance/WP2291
-- /instance/WP2291_r117696
-revision: r117696
+- /instance/WP2291_r136832
+revision: r136832
 schema-jsonld:
 - '@context': https://schema.org/
   '@id': https://wikipathways.github.io/pathways/WP2291.html

_pathways/WP3969.md

@@ -29,15 +29,15 @@ description: 'In this proposed model, H19 interacts with macroH2A, and this may
   motility in colorectal cancer. Reference: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5264449/  Proteins
   on this pathway have targeted assays available via the [https://assays.cancer.gov/available_assays?wp_id=WP3969
   CPTAC Assay Portal]'
-last-edited: 2024-05-11
+last-edited: 2025-02-24
 ndex: e40e8b42-8b68-11eb-9e72-0ac135e8bacf
 organisms:
 - Homo sapiens
 redirect_from:
 - /index.php/Pathway:WP3969
 - /instance/WP3969
-- /instance/WP3969_r129540
-revision: r129540
+- /instance/WP3969_r136829
+revision: r136829
 schema-jsonld:
 - '@context': https://schema.org/
   '@id': https://wikipathways.github.io/pathways/WP3969.html

_pathways/WP3981.md

@@ -1,13 +1,13 @@
 ---
 annotations:
-- id: DOID:10283
-  parent: disease of cellular proliferation
-  type: Disease Ontology
-  value: prostate cancer
 - id: PW:0000605
   parent: disease pathway
   type: Pathway Ontology
   value: cancer pathway
+- id: DOID:10283
+  parent: disease of cellular proliferation
+  type: Disease Ontology
+  value: prostate cancer
 authors:
 - Khanspers
 - Egonw
@@ -25,15 +25,15 @@ description: 'Diagrammatic scheme depicting potential survival pathway-related g
   subset of highly downregulated miRNAs (>2-fold) in prostate tumors. Note that some
   targeting miRNAs were removed from the original publication figure for clarity.
   These are represented in supplementary table S3: http://journals.sagepub.com/doi/suppl/10.1177/1535370216681554.'
-last-edited: 2024-05-31
+last-edited: 2025-02-24
 ndex: f4ec52de-8b68-11eb-9e72-0ac135e8bacf
 organisms:
 - Homo sapiens
 redirect_from:
 - /index.php/Pathway:WP3981
 - /instance/WP3981
-- /instance/WP3981_r130804
-revision: r130804
+- /instance/WP3981_r136827
+revision: r136827
 schema-jsonld:
 - '@context': https://schema.org/
   '@id': https://wikipathways.github.io/pathways/WP3981.html

_pathways/WP5078.md

@@ -1,44 +1,44 @@
 ---
 annotations:
-- id: PW:0000013
-  parent: disease pathway
-  type: Pathway Ontology
-  value: disease pathway
-- id: CL:0002410
-  parent: animal cell
-  type: Cell Type Ontology
-  value: pancreatic stellate cell
-- id: DOID:1793
-  parent: disease of cellular proliferation
-  type: Disease Ontology
-  value: pancreatic cancer
-- id: CL:0001064
+- id: CL:0000084
+  parent: native cell
   type: Cell Type Ontology
-  value: malignant cell
+  value: T cell
 - id: CL:0000889
   parent: native cell
   type: Cell Type Ontology
   value: myeloid suppressor cell
-- id: CL:0000625
+- id: CL:0000145
   parent: native cell
   type: Cell Type Ontology
-  value: CD8-positive, alpha-beta T cell
-- id: PW:0000626
+  value: professional antigen presenting cell
+- id: DOID:1793
+  parent: disease of cellular proliferation
+  type: Disease Ontology
+  value: pancreatic cancer
+- id: PW:0000013
   parent: disease pathway
   type: Pathway Ontology
-  value: pancreatic cancer pathway
+  value: disease pathway
+- id: CL:0000625
+  parent: native cell
+  type: Cell Type Ontology
+  value: CD8-positive, alpha-beta T cell
 - id: PW:0000023
   parent: regulatory pathway
   type: Pathway Ontology
   value: immune response pathway
-- id: CL:0000084
-  parent: native cell
+- id: CL:0002410
+  parent: animal cell
   type: Cell Type Ontology
-  value: T cell
-- id: CL:0000145
-  parent: native cell
+  value: pancreatic stellate cell
+- id: PW:0000626
+  parent: disease pathway
+  type: Pathway Ontology
+  value: pancreatic cancer pathway
+- id: CL:0001064
   type: Cell Type Ontology
-  value: professional antigen presenting cell
+  value: malignant cell
 authors:
 - DanaMustafa
 - Mkutmon
@@ -53,15 +53,15 @@ description: T cells are important effector cells in pancreatic cancer. Their fu
   is inhibited by various cellular interactions and secreted factors in the tumor
   microenvironment (TME). Both immune cells and pancreatic cancer cells are able to
   modulate T cell activation.
-last-edited: 2025-02-23
+last-edited: 2025-02-24
 ndex: null
 organisms:
 - Homo sapiens
 redirect_from:
 - /index.php/Pathway:WP5078
 - /instance/WP5078
-- /instance/WP5078_r136810
-revision: r136810
+- /instance/WP5078_r136826
+revision: r136826
 schema-jsonld:
 - '@context': https://schema.org/
   '@id': https://wikipathways.github.io/pathways/WP5078.html

_pathways/WP5285.md

@@ -1,57 +1,57 @@
 ---
 annotations:
-- id: CL:0000815
+- id: PW:0000023
+  parent: regulatory pathway
+  type: Pathway Ontology
+  value: immune response pathway
+- id: PW:0000013
+  parent: disease pathway
+  type: Pathway Ontology
+  value: disease pathway
+- id: CL:0000889
   parent: native cell
   type: Cell Type Ontology
-  value: regulatory T cell
-- id: CL:0000775
-  parent: animal cell
-  type: Cell Type Ontology
-  value: neutrophil
+  value: myeloid suppressor cell
 - id: CL:0000545
   parent: native cell
   type: Cell Type Ontology
   value: T-helper 1 cell
-- id: PW:0000626
-  parent: disease pathway
-  type: Pathway Ontology
-  value: pancreatic cancer pathway
-- id: DOID:1793
-  parent: disease of cellular proliferation
-  type: Disease Ontology
-  value: pancreatic cancer
-- id: CL:0000057
+- id: CL:0002410
   parent: animal cell
   type: Cell Type Ontology
-  value: fibroblast
-- id: PW:0000023
-  parent: regulatory pathway
-  type: Pathway Ontology
-  value: immune response pathway
-- id: CL:0000235
+  value: pancreatic stellate cell
+- id: CL:0000546
   parent: native cell
   type: Cell Type Ontology
-  value: macrophage
-- id: CL:0002410
+  value: T-helper 2 cell
+- id: CL:0000057
   parent: animal cell
   type: Cell Type Ontology
-  value: pancreatic stellate cell
-- id: CL:0000899
+  value: fibroblast
+- id: CL:0000775
+  parent: animal cell
+  type: Cell Type Ontology
+  value: neutrophil
+- id: CL:0000235
   parent: native cell
   type: Cell Type Ontology
-  value: T-helper 17 cell
-- id: PW:0000013
+  value: macrophage
+- id: PW:0000626
   parent: disease pathway
   type: Pathway Ontology
-  value: disease pathway
-- id: CL:0000546
+  value: pancreatic cancer pathway
+- id: CL:0000815
   parent: native cell
   type: Cell Type Ontology
-  value: T-helper 2 cell
-- id: CL:0000889
+  value: regulatory T cell
+- id: DOID:1793
+  parent: disease of cellular proliferation
+  type: Disease Ontology
+  value: pancreatic cancer
+- id: CL:0000899
   parent: native cell
   type: Cell Type Ontology
-  value: myeloid suppressor cell
+  value: T-helper 17 cell
 authors:
 - IsabelWassink
 - Mkutmon
@@ -68,15 +68,15 @@ description: 'Immune cell infiltration in pancreatic cancer. Various factors are
   by immune cells can be direct and/or indirect.  Used cell name abbreviations: MDSC
   = myeloid-derived suppressor cell, Treg = regulatory T cell, CAF = cancer associated
   fibroblast, PSC = pancreatic stellate cell, Th = CD4+ T helper cell.'
-last-edited: 2024-01-30
+last-edited: 2025-02-24
 ndex: null
 organisms:
 - Homo sapiens
 redirect_from:
 - /index.php/Pathway:WP5285
 - /instance/WP5285
-- /instance/WP5285_r128268
-revision: r128268
+- /instance/WP5285_r136834
+revision: r136834
 schema-jsonld:
 - '@context': https://schema.org/
   '@id': https://wikipathways.github.io/pathways/WP5285.html