-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathgql.ts
More file actions
358 lines (353 loc) · 102 KB
/
Copy pathgql.ts
File metadata and controls
358 lines (353 loc) · 102 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
/* eslint-disable */
import * as types from './graphql';
import { TypedDocumentNode as DocumentNode } from '@graphql-typed-document-node/core';
/**
* Map of all GraphQL operations in the project.
*
* This map has several performance disadvantages:
* 1. It is not tree-shakeable, so it will include all operations in the project.
* 2. It is not minifiable, so the string of a GraphQL query will be multiple times inside the bundle.
* 3. It does not support dead code elimination, so it will add unused operations.
*
* Therefore it is highly recommended to use the babel or swc plugin for production.
* Learn more about it here: https://the-guild.dev/graphql/codegen/plugins/presets/preset-client#reducing-bundle-size
*/
type Documents = {
"\n query RNASeqQuery($assembly: String!){\n rnaSeqQuery(assembly:$assembly) {\n biosample\n }\n }\n": typeof types.RnaSeqQueryDocument,
"\n query biosamples_1($assembly: String!, $assays: [String!]) {\n ccREBiosampleQuery(assembly: $assembly, assay: $assays) {\n biosamples {\n name\n ontology\n lifeStage\n sampleType\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n }\n": typeof types.Biosamples_1Document,
"\nquery cCREQuery($accession_prefix: [String!], $limit: Int, $assembly: String!) {\n cCREQuery(accession_prefix: $accession_prefix, assembly: $assembly, limit: $limit) {\n accession\n coordinates {\n start\n end\n chromosome\n }\n }\n}\n": typeof types.CCreQueryDocument,
"\nquery bedIntersectCCRE_1 ($user_ccres: [cCRE]!, $assembly: String!, $max_ouput_length: Int) {\n intersection (\n userCcres: $user_ccres,\n assembly: $assembly,\n maxOutputLength: $max_ouput_length\n )\n}\n": typeof types.BedIntersectCcre_1Document,
"\n query getGeneLocation($name: String!, $assembly: String!, $version: Int!) {\n gene(name: [$name], assembly: $assembly, version: $version) {\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n": typeof types.GetGeneLocationDocument,
"\nquery geneexpression($assembly: String!, $gene_id: [String]) {\n gene_dataset(processed_assembly: $assembly) {\n biosample\n tissue\n \tcell_compartment\n biosample_type\n \tassay_term_name\n accession \n gene_quantification_files(assembly: $assembly) {\n accession\n biorep\n quantifications(gene_id_prefix: $gene_id) {\n tpm\n file_accession\n }\n }\n }\n}\n ": typeof types.GeneexpressionDocument,
"\n query geneAutocomplete($assembly: String!, $name: [String!], $limit: Int, $version: Int) {\n gene(assembly: $assembly, name: $name, limit: $limit, version: $version) {\n name\n id\n coordinates {\n start\n chromosome\n end\n }\n }\n } ": typeof types.GeneAutocompleteDocument,
"\n query geneOrthologQuery($name: [String]!, $assembly: String!) {\n geneOrthologQuery: geneorthologQuery(name: $name, assembly: $assembly) {\n humanGene: external_gene_name\n mouseGene: mmusculus_homolog_associated_gene_name\n }\n }\n": typeof types.GeneOrthologQueryDocument,
"\n query getAllGWASStudies {\n getAllGwasStudies {\n study\n totalldblocks \n author\n pubmedid\n studyname\n \n }\n }\n": typeof types.GetAllGwasStudiesDocument,
"\n query getSNPsforgivengwasStudy($study: [String!]!){\n getSNPsforGWASStudies(study:$study) {\n snpid\n ldblock\n rsquare\n chromosome\n stop\n start\n ldblocksnpid\n }\n }": typeof types.GetSnPsforgivengwasStudyDocument,
"\n query bedIntersectCCRE ($inp: [cCRE]!, $assembly: String!, $maxOutputLength: Int) {\n intersection (\n userCcres: $inp,\n assembly: $assembly,\n maxOutputLength: $maxOutputLength\n )\n }\n": typeof types.BedIntersectCcreDocument,
"\n query ccreSearchQuery_2(\n $assembly: String!\n $celltype: String\n $accessions: [String!]\n ) {\n cCRESCREENSearch(\n assembly: $assembly\n accessions: $accessions\n cellType: $celltype\n nearbygeneslimit: 1\n ) {\n chrom\n start\n len\n pct\n nearestgenes {\n gene\n distance\n }\n ctcf_zscore\n dnase_zscore\n enhancer_zscore\n promoter_zscore\n atac_zscore\n ctspecific {\n dnase_zscore\n ctcf_zscore\n atac_zscore\n h3k4me3_zscore\n h3k27ac_zscore\n }\n info {\n accession\n }\n }\n }\n": typeof types.CcreSearchQuery_2Document,
"\n query getGWASCTEnrichmentQuery($study: String!) {\n getGWASCtEnrichmentQuery(study: $study) {\n celltype\n accession\n fc\n fdr\n pvalue\n }\n }\n": typeof types.GetGwasctEnrichmentQueryDocument,
"\n query getDisplayNames($assembly: String!, $samples: [String!]) {\n ccREBiosampleQuery(assembly: $assembly, name: $samples) {\n biosamples {\n name\n displayname\n ontology\n } \n }\n }\n": typeof types.GetDisplayNamesDocument,
"\n query q_4($assembly: String!, $assay: [String!], $a: String!) {\n ccREBiosampleQuery(assay: $assay, assembly: $assembly) {\n biosamples {\n name\n displayname\n ontology\n sampleType\n lifeStage\n umap_coordinates(assay: $a)\n experimentAccession(assay: $a)\n }\n }\n }\n": typeof types.Q_4Document,
"\n query s_3($chromosome: String, $start: Int, $end: Int, $assembly: String!) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $assembly) {\n name\n strand\n transcripts {\n name\n strand\n exons {\n coordinates {\n chromosome\n start\n end\n }\n }\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n }\n": typeof types.S_3Document,
"\nquery ENTEXQuery($accession: String!){\n entexQuery(accession: $accession){\n assay\n accession\n hap1_count\n hap2_count\n hap1_allele_ratio\n p_betabinom\n experiment_accession\n tissue\n donor \n imbalance_significance\n }\n}\n": typeof types.EntexQueryDocument,
"\nquery entexActiveAnnotationsQuery( $coordinates: GenomicRangeInput! ) {\n entexActiveAnnotationsQuery(coordinates: $coordinates) {\n tissue\n assay_score\n }\n\n}": typeof types.EntexActiveAnnotationsQueryDocument,
"\nquery cCRETF($accession: String!, $assembly: String!) {\ngetcCRETFQuery(accession: $accession, assembly: $assembly) {\n celltype\n tf\n }\n}\n": typeof types.CCretfDocument,
"\n query topTissues($accession: [String!], $assembly: String!) {\n ccREBiosampleQuery(assembly: $assembly) {\n biosamples {\n sampleType\n displayname\n cCREZScores(accession: $accession) {\n score\n assay\n experiment_accession\n }\n name\n ontology\n }\n }\n cCREQuery(assembly: $assembly, accession: $accession) {\n accession\n group\n dnase: maxZ(assay: \"DNase\")\n h3k4me3: maxZ(assay: \"H3K4me3\")\n h3k27ac: maxZ(assay: \"H3K27ac\")\n ctcf: maxZ(assay: \"CTCF\")\n atac: maxZ(assay: \"ATAC\")\n }\n }\n": typeof types.TopTissuesDocument,
"\n query linkedGenes(\n $assembly: String!\n $accessions: [String]!\n $methods: [String]\n $celltypes: [String]\n ) {\n linkedGenes: linkedGenesQuery(\n assembly: $assembly\n accession: $accessions\n method: $methods\n celltype: $celltypes\n ) {\n p_val\n gene\n geneid\n genetype\n method\n accession\n grnaid\n effectsize\n assay\n celltype\n experiment_accession\n tissue\n score\n variantid\n source\n slope\n tissue\n displayname\n }\n }\n": typeof types.LinkedGenesDocument,
"\nquery MPRA_FCC($coordinates: [GenomicRangeInput!]) {\n mpraFccQuery(coordinates: $coordinates) {\n celltype\n chromosome\n stop\n start\n assay_type\n element_location\n series\n strand\n log2fc\n experiment \n barcode_location\n }\n}\n": typeof types.Mpra_FccDocument,
"\n query crisprFccQuery($accession: [String]!) {\n crisprFccQuery(accession: $accession) {\n rdhs\n log2fc\n fdr \n pvalue\n experiment\n }\n }\n ": typeof types.CrisprFccQueryDocument,
"\nquery capraFccSoloQuery($accession: [String]!) {\n capraFccSoloQuery(accession: $accession) {\n rdhs\n log2fc\n fdr\n dna_rep1\n rna_rep1\n rna_rep2\n rna_rep3\n pvalue\n experiment\n }\n}\n": typeof types.CapraFccSoloQueryDocument,
"\nquery capraFccDoubleQuery($accession: [String]!) {\n capraFccDoubleQuery(accession: $accession) {\n rdhs_p1\n rdhs_p2\n log2fc\n fdr\n dna_rep1\n rna_rep1\n rna_rep2\n rna_rep3\n pvalue\n experiment\n }\n}\n": typeof types.CapraFccDoubleQueryDocument,
"\nquery rdhs($rDHS: [String!],$assembly: String!) {\n cCREQuery(assembly: $assembly, rDHS: $rDHS) {\n accession\n }\n}\n": typeof types.RdhsDocument,
"\nquery functionalCharacterizationQuery($coordinates: [GenomicRangeInput!],$assembly: String!) {\n functionalCharacterizationQuery(assembly: $assembly, coordinates: $coordinates) {\n tissues\n element_id\n assay_result\n chromosome\n stop\n start\n }\n}\n": typeof types.FunctionalCharacterizationQueryDocument,
"\n query geneName($assembly: String!, $name_prefix: [String!], $version: Int) {\n gene(assembly: $assembly, name_prefix: $name_prefix, version: $version) {\n name\n id\n }\n }\n": typeof types.GeneNameDocument,
"\n query orthologTab($assembly: String!, $accession: [String!]) {\n orthologQuery(accession: $accession, assembly: $assembly) {\n assembly\n accession\n ortholog {\n stop\n start\n chromosome\n accession\n }\n }\n }\n": typeof types.OrthologTabDocument,
"\n query nearbyGenomicFeatures($coordinates: [GenomicRangeInput!], $chromosome: String, $start: Int, $end: Int, $b: String!, $c: String!, $a: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $b, version: $version) {\n name\n id\n strand\n coordinates {\n chromosome\n start\n end\n }\n transcripts {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n\n cCREQuery(assembly: $c, coordinates: $coordinates) {\n accession\n coordinates {\n chromosome\n start\n end\n }\n group\n }\n\n snpQuery(coordinates: $coordinates, assembly: $a, common: true) {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n": typeof types.NearbyGenomicFeaturesDocument,
"\n query nearbyGenomicFeaturesNoSNPs($coordinates: [GenomicRangeInput!], $chromosome: String, $start: Int, $end: Int, $b: String!, $c: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $b, version: $version) {\n name\n id\n strand\n coordinates {\n chromosome\n start\n end\n }\n transcripts {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n\n cCREQuery(assembly: $c, coordinates: $coordinates) {\n accession\n coordinates {\n chromosome\n start\n end\n }\n group\n }\n }\n": typeof types.NearbyGenomicFeaturesNoSnPsDocument,
"\n query tfpeaks_1($assembly: String, $range: [ChromosomeRangeInput]!, $target: String) {\n peaks(assembly: $assembly, range: $range, target: $target) {\n peaks {\n chrom\n chrom_start\n chrom_end\n dataset {\n biosample\n accession\n target\n files(types: \"replicated_peaks\") {\n accession\n }\n }\n }\n }\n }\n": typeof types.Tfpeaks_1Document,
"\n query tfpeaks_2($assembly: String, $range: [ChromosomeRangeInput]!, $species: String) {\n peaks(assembly: $assembly, range: $range) {\n peaks {\n chrom\n chrom_start\n chrom_end\n dataset {\n biosample\n accession\n target\n }\n }\n }\n peakDataset(species: $species) {\n partitionByTarget {\n target {\n name\n }\n counts {\n total\n }\n }\n }\n }\n": typeof types.Tfpeaks_2Document,
"\n query nearbyAndLinkedGenes(\n $accessions: [String!]!\n $assembly: String!\n $geneSearchStart: Int!\n $geneSearchEnd: Int!\n $geneSearchChrom: String!\n $geneVersion: Int!\n ) {\n nearbyGenes: gene(\n chromosome: $geneSearchChrom\n start: $geneSearchStart\n end: $geneSearchEnd\n assembly: $assembly\n version: $geneVersion\n ) {\n name\n id\n gene_type\n strand\n coordinates {\n chromosome\n start\n end\n }\n transcripts {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n linkedGenes: linkedGenesQuery(assembly: $assembly, accession: $accessions) {\n accession \n p_val\n gene\n geneid\n genetype\n method\n grnaid\n effectsize\n assay\n celltype\n experiment_accession\n tissue\n variantid\n source\n slope\n score\n displayname\n }\n }\n": typeof types.NearbyAndLinkedGenesDocument,
"\n query geneQuery($assembly: String!, $name_prefix: [String!], $limit: Int, $version: Int) {\n gene(assembly: $assembly, name_prefix: $name_prefix, limit: $limit, version: $version) {\n name\n id\n coordinates {\n start\n chromosome\n end\n }\n }\n } \n ": typeof types.GeneQueryDocument,
"\n query tssRampage($gene: String!) {\n tssrampageQuery(genename: $gene) {\n start \n organ \n strand\n peakId\n biosampleName\n biosampleType\n biosampleSummary\n peakType\n expAccession\n value\n start\n end \n chrom \n genes {\n geneName\n locusType\n }\n }\n}": typeof types.TssRampageDocument,
"\n query ComputationalGeneLinks($accession: [String]!){\n ComputationalGeneLinksQuery(accession: $accession){\n gene: genename\n geneid\n genetype\n method\n celltype\n score\n methodregion\n fileaccession\n }\n }\n": typeof types.ComputationalGeneLinksDocument,
"\nquery silencersQuery($accession: [String]!){\n silencersQuery(accession: $accession){\n silencer_studies\n }\n}\n": typeof types.SilencersQueryDocument,
"\n query cCRE_1($assembly: String!, $accession: [String!], $experiments: [String!]) {\n cCREQuery(assembly: $assembly, accession: $accession) {\n group\n zScores(experiments: $experiments) {\n experiment\n score\n }\n }\n }\n": typeof types.CCre_1Document,
"\n query cCRE_2($assembly: String!, $accession: [String!]) {\n cCREQuery(assembly: $assembly, accession: $accession) {\n group\n dnase: maxZ(assay: \"dnase\")\n h3k4me3: maxZ(assay: \"h3k4me3\")\n h3k27ac: maxZ(assay: \"h3k27ac\")\n ctcf: maxZ(assay: \"ctcf\")\n atac: maxZ(assay: \"atac\")\n }\n }\n": typeof types.CCre_2Document,
"\n query cytobands($assembly: String!, $chromosome: String) {\n cytoband(assembly: $assembly, chromosome: $chromosome) {\n stain\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n": typeof types.CytobandsDocument,
"\n query biosamples_2 {\n human: ccREBiosampleQuery(assembly: \"grch38\") {\n biosamples {\n name\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\") \n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n mouse: ccREBiosampleQuery(assembly: \"mm10\") {\n biosamples {\n name\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n }\n": typeof types.Biosamples_2Document,
"\n query s_2($chromosome: String, $start: Int, $end: Int, $assembly: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $assembly, version: $version) {\n name\n strand\n transcripts {\n name\n strand\n exons {\n coordinates {\n chromosome\n start\n end\n }\n }\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n }\n": typeof types.S_2Document,
"\n query BigRequests($bigRequests: [BigRequest!]!) {\n bigRequests(requests: $bigRequests) {\n data\n error {\n errortype\n message\n }\n }\n }\n": typeof types.BigRequestsDocument,
"\n query q_1($assembly: String!) {\n ccREBiosampleQuery(assembly: $assembly) {\n biosamples {\n name\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n }\n }\n }\n": typeof types.Q_1Document,
"\n query s_1($chromosome: String, $start: Int, $end: Int, $assembly: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $assembly, version: $version) {\n name\n strand\n transcripts {\n name\n strand\n exons {\n coordinates {\n chromosome\n start\n end\n }\n }\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n }\n": typeof types.S_1Document,
"\n query geneTSS($assembly: String!, $name: [String!], $limit: Int, $version: Int) {\n gene(assembly: $assembly, name: $name, limit: $limit, version: $version) {\n name\n id\n coordinates {\n start\n chromosome\n end\n }\n strand\n transcripts {\n name\n coordinates {\n start\n end\n } \n }\n }\n } ": typeof types.GeneTssDocument,
"\n query getlistofLinkedGenesCelltypes {\n linkedGenesCelltypes: getLinkedGenesCelltypes {\n celltype\n displayname\n method\n }\n }\n": typeof types.GetlistofLinkedGenesCelltypesDocument,
"\n query getGeneLocation1($name: String!, $assembly: String!, $version: Int!) {\n gene(name: [$name], assembly: $assembly, version: $version) {\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n": typeof types.GetGeneLocation1Document,
"\n query snpAutocompleteQuery($snpid: String!, $assembly: String!) {\n snpAutocompleteQuery(snpid: $snpid, assembly: $assembly) {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n } \n": typeof types.SnpAutocompleteQueryDocument,
"\n query getAcccessionCoords($accession: [String!], $assembly: String!) {\n cCREQuery(accession: $accession, assembly: $assembly) {\n accession\n coordinates {\n start\n end\n chromosome\n }\n }\n }\n": typeof types.GetAcccessionCoordsDocument,
"\n query ccreSearchQuery_1(\n $accessions: [String!]\n $assembly: String!\n $cellType: String\n $coordinates: [GenomicRangeInput]\n $element_type: String\n $gene_all_start: Int\n $gene_all_end: Int\n $gene_pc_start: Int\n $gene_pc_end: Int\n $rank_ctcf_end: Float\n $rank_ctcf_start: Float\n $rank_dnase_end: Float\n $rank_dnase_start: Float\n $rank_enhancer_end: Float\n $rank_enhancer_start: Float\n $rank_promoter_end: Float\n $rank_promoter_start: Float\n $rank_atac_end: Float\n $rank_atac_start: Float\n $mammals_min: Float\n $mammals_max: Float\n $vertebrates_min: Float\n $vertebrates_max: Float\n $primates_min: Float\n $primates_max: Float\n $uuid: String\n $limit: Int\n $nearbygeneslimit: Int\n $nearbygenesdistancethreshold: Int\n ) {\n cCRESCREENSearch(\n assembly: $assembly\n accessions: $accessions\n cellType: $cellType\n coordinates: $coordinates\n element_type: $element_type\n gene_all_start: $gene_all_start\n gene_all_end: $gene_all_end\n gene_pc_start: $gene_pc_start\n gene_pc_end: $gene_pc_end\n rank_atac_end: $rank_atac_end\n rank_atac_start: $rank_atac_start\n rank_ctcf_end: $rank_ctcf_end\n rank_ctcf_start: $rank_ctcf_start\n rank_dnase_end: $rank_dnase_end\n rank_dnase_start: $rank_dnase_start\n rank_enhancer_end: $rank_enhancer_end\n rank_enhancer_start: $rank_enhancer_start\n rank_promoter_end: $rank_promoter_end\n rank_promoter_start: $rank_promoter_start\n mammals_min: $mammals_min\n mammals_max: $mammals_max\n vertebrates_min: $vertebrates_min\n vertebrates_max: $vertebrates_max\n primates_min: $primates_min\n primates_max: $primates_max\n uuid: $uuid\n limit: $limit\n nearbygeneslimit: $nearbygeneslimit\n nearbygenesdistancethreshold: $nearbygenesdistancethreshold\n ) {\n chrom\n start\n len\n pct\n vertebrates\n mammals\n primates\n ctcf_zscore\n dnase_zscore\n enhancer_zscore\n promoter_zscore\n atac_zscore\n ctspecific {\n ct\n dnase_zscore\n h3k4me3_zscore\n h3k27ac_zscore\n ctcf_zscore\n atac_zscore\n }\n info {\n accession\n isproximal\n concordant\n }\n nearestgenes {\n gene\n distance\n }\n }\n }\n": typeof types.CcreSearchQuery_1Document,
"\n query biosamples_3 {\n human: ccREBiosampleQuery(assembly: \"grch38\") {\n biosamples {\n name\n ontology\n lifeStage\n sampleType\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n mouse: ccREBiosampleQuery(assembly: \"mm10\") {\n biosamples {\n name\n ontology\n lifeStage\n sampleType\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n }\n": typeof types.Biosamples_3Document,
};
const documents: Documents = {
"\n query RNASeqQuery($assembly: String!){\n rnaSeqQuery(assembly:$assembly) {\n biosample\n }\n }\n": types.RnaSeqQueryDocument,
"\n query biosamples_1($assembly: String!, $assays: [String!]) {\n ccREBiosampleQuery(assembly: $assembly, assay: $assays) {\n biosamples {\n name\n ontology\n lifeStage\n sampleType\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n }\n": types.Biosamples_1Document,
"\nquery cCREQuery($accession_prefix: [String!], $limit: Int, $assembly: String!) {\n cCREQuery(accession_prefix: $accession_prefix, assembly: $assembly, limit: $limit) {\n accession\n coordinates {\n start\n end\n chromosome\n }\n }\n}\n": types.CCreQueryDocument,
"\nquery bedIntersectCCRE_1 ($user_ccres: [cCRE]!, $assembly: String!, $max_ouput_length: Int) {\n intersection (\n userCcres: $user_ccres,\n assembly: $assembly,\n maxOutputLength: $max_ouput_length\n )\n}\n": types.BedIntersectCcre_1Document,
"\n query getGeneLocation($name: String!, $assembly: String!, $version: Int!) {\n gene(name: [$name], assembly: $assembly, version: $version) {\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n": types.GetGeneLocationDocument,
"\nquery geneexpression($assembly: String!, $gene_id: [String]) {\n gene_dataset(processed_assembly: $assembly) {\n biosample\n tissue\n \tcell_compartment\n biosample_type\n \tassay_term_name\n accession \n gene_quantification_files(assembly: $assembly) {\n accession\n biorep\n quantifications(gene_id_prefix: $gene_id) {\n tpm\n file_accession\n }\n }\n }\n}\n ": types.GeneexpressionDocument,
"\n query geneAutocomplete($assembly: String!, $name: [String!], $limit: Int, $version: Int) {\n gene(assembly: $assembly, name: $name, limit: $limit, version: $version) {\n name\n id\n coordinates {\n start\n chromosome\n end\n }\n }\n } ": types.GeneAutocompleteDocument,
"\n query geneOrthologQuery($name: [String]!, $assembly: String!) {\n geneOrthologQuery: geneorthologQuery(name: $name, assembly: $assembly) {\n humanGene: external_gene_name\n mouseGene: mmusculus_homolog_associated_gene_name\n }\n }\n": types.GeneOrthologQueryDocument,
"\n query getAllGWASStudies {\n getAllGwasStudies {\n study\n totalldblocks \n author\n pubmedid\n studyname\n \n }\n }\n": types.GetAllGwasStudiesDocument,
"\n query getSNPsforgivengwasStudy($study: [String!]!){\n getSNPsforGWASStudies(study:$study) {\n snpid\n ldblock\n rsquare\n chromosome\n stop\n start\n ldblocksnpid\n }\n }": types.GetSnPsforgivengwasStudyDocument,
"\n query bedIntersectCCRE ($inp: [cCRE]!, $assembly: String!, $maxOutputLength: Int) {\n intersection (\n userCcres: $inp,\n assembly: $assembly,\n maxOutputLength: $maxOutputLength\n )\n }\n": types.BedIntersectCcreDocument,
"\n query ccreSearchQuery_2(\n $assembly: String!\n $celltype: String\n $accessions: [String!]\n ) {\n cCRESCREENSearch(\n assembly: $assembly\n accessions: $accessions\n cellType: $celltype\n nearbygeneslimit: 1\n ) {\n chrom\n start\n len\n pct\n nearestgenes {\n gene\n distance\n }\n ctcf_zscore\n dnase_zscore\n enhancer_zscore\n promoter_zscore\n atac_zscore\n ctspecific {\n dnase_zscore\n ctcf_zscore\n atac_zscore\n h3k4me3_zscore\n h3k27ac_zscore\n }\n info {\n accession\n }\n }\n }\n": types.CcreSearchQuery_2Document,
"\n query getGWASCTEnrichmentQuery($study: String!) {\n getGWASCtEnrichmentQuery(study: $study) {\n celltype\n accession\n fc\n fdr\n pvalue\n }\n }\n": types.GetGwasctEnrichmentQueryDocument,
"\n query getDisplayNames($assembly: String!, $samples: [String!]) {\n ccREBiosampleQuery(assembly: $assembly, name: $samples) {\n biosamples {\n name\n displayname\n ontology\n } \n }\n }\n": types.GetDisplayNamesDocument,
"\n query q_4($assembly: String!, $assay: [String!], $a: String!) {\n ccREBiosampleQuery(assay: $assay, assembly: $assembly) {\n biosamples {\n name\n displayname\n ontology\n sampleType\n lifeStage\n umap_coordinates(assay: $a)\n experimentAccession(assay: $a)\n }\n }\n }\n": types.Q_4Document,
"\n query s_3($chromosome: String, $start: Int, $end: Int, $assembly: String!) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $assembly) {\n name\n strand\n transcripts {\n name\n strand\n exons {\n coordinates {\n chromosome\n start\n end\n }\n }\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n }\n": types.S_3Document,
"\nquery ENTEXQuery($accession: String!){\n entexQuery(accession: $accession){\n assay\n accession\n hap1_count\n hap2_count\n hap1_allele_ratio\n p_betabinom\n experiment_accession\n tissue\n donor \n imbalance_significance\n }\n}\n": types.EntexQueryDocument,
"\nquery entexActiveAnnotationsQuery( $coordinates: GenomicRangeInput! ) {\n entexActiveAnnotationsQuery(coordinates: $coordinates) {\n tissue\n assay_score\n }\n\n}": types.EntexActiveAnnotationsQueryDocument,
"\nquery cCRETF($accession: String!, $assembly: String!) {\ngetcCRETFQuery(accession: $accession, assembly: $assembly) {\n celltype\n tf\n }\n}\n": types.CCretfDocument,
"\n query topTissues($accession: [String!], $assembly: String!) {\n ccREBiosampleQuery(assembly: $assembly) {\n biosamples {\n sampleType\n displayname\n cCREZScores(accession: $accession) {\n score\n assay\n experiment_accession\n }\n name\n ontology\n }\n }\n cCREQuery(assembly: $assembly, accession: $accession) {\n accession\n group\n dnase: maxZ(assay: \"DNase\")\n h3k4me3: maxZ(assay: \"H3K4me3\")\n h3k27ac: maxZ(assay: \"H3K27ac\")\n ctcf: maxZ(assay: \"CTCF\")\n atac: maxZ(assay: \"ATAC\")\n }\n }\n": types.TopTissuesDocument,
"\n query linkedGenes(\n $assembly: String!\n $accessions: [String]!\n $methods: [String]\n $celltypes: [String]\n ) {\n linkedGenes: linkedGenesQuery(\n assembly: $assembly\n accession: $accessions\n method: $methods\n celltype: $celltypes\n ) {\n p_val\n gene\n geneid\n genetype\n method\n accession\n grnaid\n effectsize\n assay\n celltype\n experiment_accession\n tissue\n score\n variantid\n source\n slope\n tissue\n displayname\n }\n }\n": types.LinkedGenesDocument,
"\nquery MPRA_FCC($coordinates: [GenomicRangeInput!]) {\n mpraFccQuery(coordinates: $coordinates) {\n celltype\n chromosome\n stop\n start\n assay_type\n element_location\n series\n strand\n log2fc\n experiment \n barcode_location\n }\n}\n": types.Mpra_FccDocument,
"\n query crisprFccQuery($accession: [String]!) {\n crisprFccQuery(accession: $accession) {\n rdhs\n log2fc\n fdr \n pvalue\n experiment\n }\n }\n ": types.CrisprFccQueryDocument,
"\nquery capraFccSoloQuery($accession: [String]!) {\n capraFccSoloQuery(accession: $accession) {\n rdhs\n log2fc\n fdr\n dna_rep1\n rna_rep1\n rna_rep2\n rna_rep3\n pvalue\n experiment\n }\n}\n": types.CapraFccSoloQueryDocument,
"\nquery capraFccDoubleQuery($accession: [String]!) {\n capraFccDoubleQuery(accession: $accession) {\n rdhs_p1\n rdhs_p2\n log2fc\n fdr\n dna_rep1\n rna_rep1\n rna_rep2\n rna_rep3\n pvalue\n experiment\n }\n}\n": types.CapraFccDoubleQueryDocument,
"\nquery rdhs($rDHS: [String!],$assembly: String!) {\n cCREQuery(assembly: $assembly, rDHS: $rDHS) {\n accession\n }\n}\n": types.RdhsDocument,
"\nquery functionalCharacterizationQuery($coordinates: [GenomicRangeInput!],$assembly: String!) {\n functionalCharacterizationQuery(assembly: $assembly, coordinates: $coordinates) {\n tissues\n element_id\n assay_result\n chromosome\n stop\n start\n }\n}\n": types.FunctionalCharacterizationQueryDocument,
"\n query geneName($assembly: String!, $name_prefix: [String!], $version: Int) {\n gene(assembly: $assembly, name_prefix: $name_prefix, version: $version) {\n name\n id\n }\n }\n": types.GeneNameDocument,
"\n query orthologTab($assembly: String!, $accession: [String!]) {\n orthologQuery(accession: $accession, assembly: $assembly) {\n assembly\n accession\n ortholog {\n stop\n start\n chromosome\n accession\n }\n }\n }\n": types.OrthologTabDocument,
"\n query nearbyGenomicFeatures($coordinates: [GenomicRangeInput!], $chromosome: String, $start: Int, $end: Int, $b: String!, $c: String!, $a: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $b, version: $version) {\n name\n id\n strand\n coordinates {\n chromosome\n start\n end\n }\n transcripts {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n\n cCREQuery(assembly: $c, coordinates: $coordinates) {\n accession\n coordinates {\n chromosome\n start\n end\n }\n group\n }\n\n snpQuery(coordinates: $coordinates, assembly: $a, common: true) {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n": types.NearbyGenomicFeaturesDocument,
"\n query nearbyGenomicFeaturesNoSNPs($coordinates: [GenomicRangeInput!], $chromosome: String, $start: Int, $end: Int, $b: String!, $c: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $b, version: $version) {\n name\n id\n strand\n coordinates {\n chromosome\n start\n end\n }\n transcripts {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n\n cCREQuery(assembly: $c, coordinates: $coordinates) {\n accession\n coordinates {\n chromosome\n start\n end\n }\n group\n }\n }\n": types.NearbyGenomicFeaturesNoSnPsDocument,
"\n query tfpeaks_1($assembly: String, $range: [ChromosomeRangeInput]!, $target: String) {\n peaks(assembly: $assembly, range: $range, target: $target) {\n peaks {\n chrom\n chrom_start\n chrom_end\n dataset {\n biosample\n accession\n target\n files(types: \"replicated_peaks\") {\n accession\n }\n }\n }\n }\n }\n": types.Tfpeaks_1Document,
"\n query tfpeaks_2($assembly: String, $range: [ChromosomeRangeInput]!, $species: String) {\n peaks(assembly: $assembly, range: $range) {\n peaks {\n chrom\n chrom_start\n chrom_end\n dataset {\n biosample\n accession\n target\n }\n }\n }\n peakDataset(species: $species) {\n partitionByTarget {\n target {\n name\n }\n counts {\n total\n }\n }\n }\n }\n": types.Tfpeaks_2Document,
"\n query nearbyAndLinkedGenes(\n $accessions: [String!]!\n $assembly: String!\n $geneSearchStart: Int!\n $geneSearchEnd: Int!\n $geneSearchChrom: String!\n $geneVersion: Int!\n ) {\n nearbyGenes: gene(\n chromosome: $geneSearchChrom\n start: $geneSearchStart\n end: $geneSearchEnd\n assembly: $assembly\n version: $geneVersion\n ) {\n name\n id\n gene_type\n strand\n coordinates {\n chromosome\n start\n end\n }\n transcripts {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n linkedGenes: linkedGenesQuery(assembly: $assembly, accession: $accessions) {\n accession \n p_val\n gene\n geneid\n genetype\n method\n grnaid\n effectsize\n assay\n celltype\n experiment_accession\n tissue\n variantid\n source\n slope\n score\n displayname\n }\n }\n": types.NearbyAndLinkedGenesDocument,
"\n query geneQuery($assembly: String!, $name_prefix: [String!], $limit: Int, $version: Int) {\n gene(assembly: $assembly, name_prefix: $name_prefix, limit: $limit, version: $version) {\n name\n id\n coordinates {\n start\n chromosome\n end\n }\n }\n } \n ": types.GeneQueryDocument,
"\n query tssRampage($gene: String!) {\n tssrampageQuery(genename: $gene) {\n start \n organ \n strand\n peakId\n biosampleName\n biosampleType\n biosampleSummary\n peakType\n expAccession\n value\n start\n end \n chrom \n genes {\n geneName\n locusType\n }\n }\n}": types.TssRampageDocument,
"\n query ComputationalGeneLinks($accession: [String]!){\n ComputationalGeneLinksQuery(accession: $accession){\n gene: genename\n geneid\n genetype\n method\n celltype\n score\n methodregion\n fileaccession\n }\n }\n": types.ComputationalGeneLinksDocument,
"\nquery silencersQuery($accession: [String]!){\n silencersQuery(accession: $accession){\n silencer_studies\n }\n}\n": types.SilencersQueryDocument,
"\n query cCRE_1($assembly: String!, $accession: [String!], $experiments: [String!]) {\n cCREQuery(assembly: $assembly, accession: $accession) {\n group\n zScores(experiments: $experiments) {\n experiment\n score\n }\n }\n }\n": types.CCre_1Document,
"\n query cCRE_2($assembly: String!, $accession: [String!]) {\n cCREQuery(assembly: $assembly, accession: $accession) {\n group\n dnase: maxZ(assay: \"dnase\")\n h3k4me3: maxZ(assay: \"h3k4me3\")\n h3k27ac: maxZ(assay: \"h3k27ac\")\n ctcf: maxZ(assay: \"ctcf\")\n atac: maxZ(assay: \"atac\")\n }\n }\n": types.CCre_2Document,
"\n query cytobands($assembly: String!, $chromosome: String) {\n cytoband(assembly: $assembly, chromosome: $chromosome) {\n stain\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n": types.CytobandsDocument,
"\n query biosamples_2 {\n human: ccREBiosampleQuery(assembly: \"grch38\") {\n biosamples {\n name\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\") \n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n mouse: ccREBiosampleQuery(assembly: \"mm10\") {\n biosamples {\n name\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n }\n": types.Biosamples_2Document,
"\n query s_2($chromosome: String, $start: Int, $end: Int, $assembly: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $assembly, version: $version) {\n name\n strand\n transcripts {\n name\n strand\n exons {\n coordinates {\n chromosome\n start\n end\n }\n }\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n }\n": types.S_2Document,
"\n query BigRequests($bigRequests: [BigRequest!]!) {\n bigRequests(requests: $bigRequests) {\n data\n error {\n errortype\n message\n }\n }\n }\n": types.BigRequestsDocument,
"\n query q_1($assembly: String!) {\n ccREBiosampleQuery(assembly: $assembly) {\n biosamples {\n name\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n }\n }\n }\n": types.Q_1Document,
"\n query s_1($chromosome: String, $start: Int, $end: Int, $assembly: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $assembly, version: $version) {\n name\n strand\n transcripts {\n name\n strand\n exons {\n coordinates {\n chromosome\n start\n end\n }\n }\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n }\n": types.S_1Document,
"\n query geneTSS($assembly: String!, $name: [String!], $limit: Int, $version: Int) {\n gene(assembly: $assembly, name: $name, limit: $limit, version: $version) {\n name\n id\n coordinates {\n start\n chromosome\n end\n }\n strand\n transcripts {\n name\n coordinates {\n start\n end\n } \n }\n }\n } ": types.GeneTssDocument,
"\n query getlistofLinkedGenesCelltypes {\n linkedGenesCelltypes: getLinkedGenesCelltypes {\n celltype\n displayname\n method\n }\n }\n": types.GetlistofLinkedGenesCelltypesDocument,
"\n query getGeneLocation1($name: String!, $assembly: String!, $version: Int!) {\n gene(name: [$name], assembly: $assembly, version: $version) {\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n": types.GetGeneLocation1Document,
"\n query snpAutocompleteQuery($snpid: String!, $assembly: String!) {\n snpAutocompleteQuery(snpid: $snpid, assembly: $assembly) {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n } \n": types.SnpAutocompleteQueryDocument,
"\n query getAcccessionCoords($accession: [String!], $assembly: String!) {\n cCREQuery(accession: $accession, assembly: $assembly) {\n accession\n coordinates {\n start\n end\n chromosome\n }\n }\n }\n": types.GetAcccessionCoordsDocument,
"\n query ccreSearchQuery_1(\n $accessions: [String!]\n $assembly: String!\n $cellType: String\n $coordinates: [GenomicRangeInput]\n $element_type: String\n $gene_all_start: Int\n $gene_all_end: Int\n $gene_pc_start: Int\n $gene_pc_end: Int\n $rank_ctcf_end: Float\n $rank_ctcf_start: Float\n $rank_dnase_end: Float\n $rank_dnase_start: Float\n $rank_enhancer_end: Float\n $rank_enhancer_start: Float\n $rank_promoter_end: Float\n $rank_promoter_start: Float\n $rank_atac_end: Float\n $rank_atac_start: Float\n $mammals_min: Float\n $mammals_max: Float\n $vertebrates_min: Float\n $vertebrates_max: Float\n $primates_min: Float\n $primates_max: Float\n $uuid: String\n $limit: Int\n $nearbygeneslimit: Int\n $nearbygenesdistancethreshold: Int\n ) {\n cCRESCREENSearch(\n assembly: $assembly\n accessions: $accessions\n cellType: $cellType\n coordinates: $coordinates\n element_type: $element_type\n gene_all_start: $gene_all_start\n gene_all_end: $gene_all_end\n gene_pc_start: $gene_pc_start\n gene_pc_end: $gene_pc_end\n rank_atac_end: $rank_atac_end\n rank_atac_start: $rank_atac_start\n rank_ctcf_end: $rank_ctcf_end\n rank_ctcf_start: $rank_ctcf_start\n rank_dnase_end: $rank_dnase_end\n rank_dnase_start: $rank_dnase_start\n rank_enhancer_end: $rank_enhancer_end\n rank_enhancer_start: $rank_enhancer_start\n rank_promoter_end: $rank_promoter_end\n rank_promoter_start: $rank_promoter_start\n mammals_min: $mammals_min\n mammals_max: $mammals_max\n vertebrates_min: $vertebrates_min\n vertebrates_max: $vertebrates_max\n primates_min: $primates_min\n primates_max: $primates_max\n uuid: $uuid\n limit: $limit\n nearbygeneslimit: $nearbygeneslimit\n nearbygenesdistancethreshold: $nearbygenesdistancethreshold\n ) {\n chrom\n start\n len\n pct\n vertebrates\n mammals\n primates\n ctcf_zscore\n dnase_zscore\n enhancer_zscore\n promoter_zscore\n atac_zscore\n ctspecific {\n ct\n dnase_zscore\n h3k4me3_zscore\n h3k27ac_zscore\n ctcf_zscore\n atac_zscore\n }\n info {\n accession\n isproximal\n concordant\n }\n nearestgenes {\n gene\n distance\n }\n }\n }\n": types.CcreSearchQuery_1Document,
"\n query biosamples_3 {\n human: ccREBiosampleQuery(assembly: \"grch38\") {\n biosamples {\n name\n ontology\n lifeStage\n sampleType\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n mouse: ccREBiosampleQuery(assembly: \"mm10\") {\n biosamples {\n name\n ontology\n lifeStage\n sampleType\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n }\n": types.Biosamples_3Document,
};
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*
*
* @example
* ```ts
* const query = gql(`query GetUser($id: ID!) { user(id: $id) { name } }`);
* ```
*
* The query argument is unknown!
* Please regenerate the types.
*/
export function gql(source: string): unknown;
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query RNASeqQuery($assembly: String!){\n rnaSeqQuery(assembly:$assembly) {\n biosample\n }\n }\n"): (typeof documents)["\n query RNASeqQuery($assembly: String!){\n rnaSeqQuery(assembly:$assembly) {\n biosample\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query biosamples_1($assembly: String!, $assays: [String!]) {\n ccREBiosampleQuery(assembly: $assembly, assay: $assays) {\n biosamples {\n name\n ontology\n lifeStage\n sampleType\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n }\n"): (typeof documents)["\n query biosamples_1($assembly: String!, $assays: [String!]) {\n ccREBiosampleQuery(assembly: $assembly, assay: $assays) {\n biosamples {\n name\n ontology\n lifeStage\n sampleType\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\nquery cCREQuery($accession_prefix: [String!], $limit: Int, $assembly: String!) {\n cCREQuery(accession_prefix: $accession_prefix, assembly: $assembly, limit: $limit) {\n accession\n coordinates {\n start\n end\n chromosome\n }\n }\n}\n"): (typeof documents)["\nquery cCREQuery($accession_prefix: [String!], $limit: Int, $assembly: String!) {\n cCREQuery(accession_prefix: $accession_prefix, assembly: $assembly, limit: $limit) {\n accession\n coordinates {\n start\n end\n chromosome\n }\n }\n}\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\nquery bedIntersectCCRE_1 ($user_ccres: [cCRE]!, $assembly: String!, $max_ouput_length: Int) {\n intersection (\n userCcres: $user_ccres,\n assembly: $assembly,\n maxOutputLength: $max_ouput_length\n )\n}\n"): (typeof documents)["\nquery bedIntersectCCRE_1 ($user_ccres: [cCRE]!, $assembly: String!, $max_ouput_length: Int) {\n intersection (\n userCcres: $user_ccres,\n assembly: $assembly,\n maxOutputLength: $max_ouput_length\n )\n}\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query getGeneLocation($name: String!, $assembly: String!, $version: Int!) {\n gene(name: [$name], assembly: $assembly, version: $version) {\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n"): (typeof documents)["\n query getGeneLocation($name: String!, $assembly: String!, $version: Int!) {\n gene(name: [$name], assembly: $assembly, version: $version) {\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\nquery geneexpression($assembly: String!, $gene_id: [String]) {\n gene_dataset(processed_assembly: $assembly) {\n biosample\n tissue\n \tcell_compartment\n biosample_type\n \tassay_term_name\n accession \n gene_quantification_files(assembly: $assembly) {\n accession\n biorep\n quantifications(gene_id_prefix: $gene_id) {\n tpm\n file_accession\n }\n }\n }\n}\n "): (typeof documents)["\nquery geneexpression($assembly: String!, $gene_id: [String]) {\n gene_dataset(processed_assembly: $assembly) {\n biosample\n tissue\n \tcell_compartment\n biosample_type\n \tassay_term_name\n accession \n gene_quantification_files(assembly: $assembly) {\n accession\n biorep\n quantifications(gene_id_prefix: $gene_id) {\n tpm\n file_accession\n }\n }\n }\n}\n "];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query geneAutocomplete($assembly: String!, $name: [String!], $limit: Int, $version: Int) {\n gene(assembly: $assembly, name: $name, limit: $limit, version: $version) {\n name\n id\n coordinates {\n start\n chromosome\n end\n }\n }\n } "): (typeof documents)["\n query geneAutocomplete($assembly: String!, $name: [String!], $limit: Int, $version: Int) {\n gene(assembly: $assembly, name: $name, limit: $limit, version: $version) {\n name\n id\n coordinates {\n start\n chromosome\n end\n }\n }\n } "];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query geneOrthologQuery($name: [String]!, $assembly: String!) {\n geneOrthologQuery: geneorthologQuery(name: $name, assembly: $assembly) {\n humanGene: external_gene_name\n mouseGene: mmusculus_homolog_associated_gene_name\n }\n }\n"): (typeof documents)["\n query geneOrthologQuery($name: [String]!, $assembly: String!) {\n geneOrthologQuery: geneorthologQuery(name: $name, assembly: $assembly) {\n humanGene: external_gene_name\n mouseGene: mmusculus_homolog_associated_gene_name\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query getAllGWASStudies {\n getAllGwasStudies {\n study\n totalldblocks \n author\n pubmedid\n studyname\n \n }\n }\n"): (typeof documents)["\n query getAllGWASStudies {\n getAllGwasStudies {\n study\n totalldblocks \n author\n pubmedid\n studyname\n \n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query getSNPsforgivengwasStudy($study: [String!]!){\n getSNPsforGWASStudies(study:$study) {\n snpid\n ldblock\n rsquare\n chromosome\n stop\n start\n ldblocksnpid\n }\n }"): (typeof documents)["\n query getSNPsforgivengwasStudy($study: [String!]!){\n getSNPsforGWASStudies(study:$study) {\n snpid\n ldblock\n rsquare\n chromosome\n stop\n start\n ldblocksnpid\n }\n }"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query bedIntersectCCRE ($inp: [cCRE]!, $assembly: String!, $maxOutputLength: Int) {\n intersection (\n userCcres: $inp,\n assembly: $assembly,\n maxOutputLength: $maxOutputLength\n )\n }\n"): (typeof documents)["\n query bedIntersectCCRE ($inp: [cCRE]!, $assembly: String!, $maxOutputLength: Int) {\n intersection (\n userCcres: $inp,\n assembly: $assembly,\n maxOutputLength: $maxOutputLength\n )\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query ccreSearchQuery_2(\n $assembly: String!\n $celltype: String\n $accessions: [String!]\n ) {\n cCRESCREENSearch(\n assembly: $assembly\n accessions: $accessions\n cellType: $celltype\n nearbygeneslimit: 1\n ) {\n chrom\n start\n len\n pct\n nearestgenes {\n gene\n distance\n }\n ctcf_zscore\n dnase_zscore\n enhancer_zscore\n promoter_zscore\n atac_zscore\n ctspecific {\n dnase_zscore\n ctcf_zscore\n atac_zscore\n h3k4me3_zscore\n h3k27ac_zscore\n }\n info {\n accession\n }\n }\n }\n"): (typeof documents)["\n query ccreSearchQuery_2(\n $assembly: String!\n $celltype: String\n $accessions: [String!]\n ) {\n cCRESCREENSearch(\n assembly: $assembly\n accessions: $accessions\n cellType: $celltype\n nearbygeneslimit: 1\n ) {\n chrom\n start\n len\n pct\n nearestgenes {\n gene\n distance\n }\n ctcf_zscore\n dnase_zscore\n enhancer_zscore\n promoter_zscore\n atac_zscore\n ctspecific {\n dnase_zscore\n ctcf_zscore\n atac_zscore\n h3k4me3_zscore\n h3k27ac_zscore\n }\n info {\n accession\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query getGWASCTEnrichmentQuery($study: String!) {\n getGWASCtEnrichmentQuery(study: $study) {\n celltype\n accession\n fc\n fdr\n pvalue\n }\n }\n"): (typeof documents)["\n query getGWASCTEnrichmentQuery($study: String!) {\n getGWASCtEnrichmentQuery(study: $study) {\n celltype\n accession\n fc\n fdr\n pvalue\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query getDisplayNames($assembly: String!, $samples: [String!]) {\n ccREBiosampleQuery(assembly: $assembly, name: $samples) {\n biosamples {\n name\n displayname\n ontology\n } \n }\n }\n"): (typeof documents)["\n query getDisplayNames($assembly: String!, $samples: [String!]) {\n ccREBiosampleQuery(assembly: $assembly, name: $samples) {\n biosamples {\n name\n displayname\n ontology\n } \n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query q_4($assembly: String!, $assay: [String!], $a: String!) {\n ccREBiosampleQuery(assay: $assay, assembly: $assembly) {\n biosamples {\n name\n displayname\n ontology\n sampleType\n lifeStage\n umap_coordinates(assay: $a)\n experimentAccession(assay: $a)\n }\n }\n }\n"): (typeof documents)["\n query q_4($assembly: String!, $assay: [String!], $a: String!) {\n ccREBiosampleQuery(assay: $assay, assembly: $assembly) {\n biosamples {\n name\n displayname\n ontology\n sampleType\n lifeStage\n umap_coordinates(assay: $a)\n experimentAccession(assay: $a)\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query s_3($chromosome: String, $start: Int, $end: Int, $assembly: String!) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $assembly) {\n name\n strand\n transcripts {\n name\n strand\n exons {\n coordinates {\n chromosome\n start\n end\n }\n }\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n }\n"): (typeof documents)["\n query s_3($chromosome: String, $start: Int, $end: Int, $assembly: String!) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $assembly) {\n name\n strand\n transcripts {\n name\n strand\n exons {\n coordinates {\n chromosome\n start\n end\n }\n }\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\nquery ENTEXQuery($accession: String!){\n entexQuery(accession: $accession){\n assay\n accession\n hap1_count\n hap2_count\n hap1_allele_ratio\n p_betabinom\n experiment_accession\n tissue\n donor \n imbalance_significance\n }\n}\n"): (typeof documents)["\nquery ENTEXQuery($accession: String!){\n entexQuery(accession: $accession){\n assay\n accession\n hap1_count\n hap2_count\n hap1_allele_ratio\n p_betabinom\n experiment_accession\n tissue\n donor \n imbalance_significance\n }\n}\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\nquery entexActiveAnnotationsQuery( $coordinates: GenomicRangeInput! ) {\n entexActiveAnnotationsQuery(coordinates: $coordinates) {\n tissue\n assay_score\n }\n\n}"): (typeof documents)["\nquery entexActiveAnnotationsQuery( $coordinates: GenomicRangeInput! ) {\n entexActiveAnnotationsQuery(coordinates: $coordinates) {\n tissue\n assay_score\n }\n\n}"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\nquery cCRETF($accession: String!, $assembly: String!) {\ngetcCRETFQuery(accession: $accession, assembly: $assembly) {\n celltype\n tf\n }\n}\n"): (typeof documents)["\nquery cCRETF($accession: String!, $assembly: String!) {\ngetcCRETFQuery(accession: $accession, assembly: $assembly) {\n celltype\n tf\n }\n}\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query topTissues($accession: [String!], $assembly: String!) {\n ccREBiosampleQuery(assembly: $assembly) {\n biosamples {\n sampleType\n displayname\n cCREZScores(accession: $accession) {\n score\n assay\n experiment_accession\n }\n name\n ontology\n }\n }\n cCREQuery(assembly: $assembly, accession: $accession) {\n accession\n group\n dnase: maxZ(assay: \"DNase\")\n h3k4me3: maxZ(assay: \"H3K4me3\")\n h3k27ac: maxZ(assay: \"H3K27ac\")\n ctcf: maxZ(assay: \"CTCF\")\n atac: maxZ(assay: \"ATAC\")\n }\n }\n"): (typeof documents)["\n query topTissues($accession: [String!], $assembly: String!) {\n ccREBiosampleQuery(assembly: $assembly) {\n biosamples {\n sampleType\n displayname\n cCREZScores(accession: $accession) {\n score\n assay\n experiment_accession\n }\n name\n ontology\n }\n }\n cCREQuery(assembly: $assembly, accession: $accession) {\n accession\n group\n dnase: maxZ(assay: \"DNase\")\n h3k4me3: maxZ(assay: \"H3K4me3\")\n h3k27ac: maxZ(assay: \"H3K27ac\")\n ctcf: maxZ(assay: \"CTCF\")\n atac: maxZ(assay: \"ATAC\")\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query linkedGenes(\n $assembly: String!\n $accessions: [String]!\n $methods: [String]\n $celltypes: [String]\n ) {\n linkedGenes: linkedGenesQuery(\n assembly: $assembly\n accession: $accessions\n method: $methods\n celltype: $celltypes\n ) {\n p_val\n gene\n geneid\n genetype\n method\n accession\n grnaid\n effectsize\n assay\n celltype\n experiment_accession\n tissue\n score\n variantid\n source\n slope\n tissue\n displayname\n }\n }\n"): (typeof documents)["\n query linkedGenes(\n $assembly: String!\n $accessions: [String]!\n $methods: [String]\n $celltypes: [String]\n ) {\n linkedGenes: linkedGenesQuery(\n assembly: $assembly\n accession: $accessions\n method: $methods\n celltype: $celltypes\n ) {\n p_val\n gene\n geneid\n genetype\n method\n accession\n grnaid\n effectsize\n assay\n celltype\n experiment_accession\n tissue\n score\n variantid\n source\n slope\n tissue\n displayname\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\nquery MPRA_FCC($coordinates: [GenomicRangeInput!]) {\n mpraFccQuery(coordinates: $coordinates) {\n celltype\n chromosome\n stop\n start\n assay_type\n element_location\n series\n strand\n log2fc\n experiment \n barcode_location\n }\n}\n"): (typeof documents)["\nquery MPRA_FCC($coordinates: [GenomicRangeInput!]) {\n mpraFccQuery(coordinates: $coordinates) {\n celltype\n chromosome\n stop\n start\n assay_type\n element_location\n series\n strand\n log2fc\n experiment \n barcode_location\n }\n}\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query crisprFccQuery($accession: [String]!) {\n crisprFccQuery(accession: $accession) {\n rdhs\n log2fc\n fdr \n pvalue\n experiment\n }\n }\n "): (typeof documents)["\n query crisprFccQuery($accession: [String]!) {\n crisprFccQuery(accession: $accession) {\n rdhs\n log2fc\n fdr \n pvalue\n experiment\n }\n }\n "];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\nquery capraFccSoloQuery($accession: [String]!) {\n capraFccSoloQuery(accession: $accession) {\n rdhs\n log2fc\n fdr\n dna_rep1\n rna_rep1\n rna_rep2\n rna_rep3\n pvalue\n experiment\n }\n}\n"): (typeof documents)["\nquery capraFccSoloQuery($accession: [String]!) {\n capraFccSoloQuery(accession: $accession) {\n rdhs\n log2fc\n fdr\n dna_rep1\n rna_rep1\n rna_rep2\n rna_rep3\n pvalue\n experiment\n }\n}\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\nquery capraFccDoubleQuery($accession: [String]!) {\n capraFccDoubleQuery(accession: $accession) {\n rdhs_p1\n rdhs_p2\n log2fc\n fdr\n dna_rep1\n rna_rep1\n rna_rep2\n rna_rep3\n pvalue\n experiment\n }\n}\n"): (typeof documents)["\nquery capraFccDoubleQuery($accession: [String]!) {\n capraFccDoubleQuery(accession: $accession) {\n rdhs_p1\n rdhs_p2\n log2fc\n fdr\n dna_rep1\n rna_rep1\n rna_rep2\n rna_rep3\n pvalue\n experiment\n }\n}\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\nquery rdhs($rDHS: [String!],$assembly: String!) {\n cCREQuery(assembly: $assembly, rDHS: $rDHS) {\n accession\n }\n}\n"): (typeof documents)["\nquery rdhs($rDHS: [String!],$assembly: String!) {\n cCREQuery(assembly: $assembly, rDHS: $rDHS) {\n accession\n }\n}\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\nquery functionalCharacterizationQuery($coordinates: [GenomicRangeInput!],$assembly: String!) {\n functionalCharacterizationQuery(assembly: $assembly, coordinates: $coordinates) {\n tissues\n element_id\n assay_result\n chromosome\n stop\n start\n }\n}\n"): (typeof documents)["\nquery functionalCharacterizationQuery($coordinates: [GenomicRangeInput!],$assembly: String!) {\n functionalCharacterizationQuery(assembly: $assembly, coordinates: $coordinates) {\n tissues\n element_id\n assay_result\n chromosome\n stop\n start\n }\n}\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query geneName($assembly: String!, $name_prefix: [String!], $version: Int) {\n gene(assembly: $assembly, name_prefix: $name_prefix, version: $version) {\n name\n id\n }\n }\n"): (typeof documents)["\n query geneName($assembly: String!, $name_prefix: [String!], $version: Int) {\n gene(assembly: $assembly, name_prefix: $name_prefix, version: $version) {\n name\n id\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query orthologTab($assembly: String!, $accession: [String!]) {\n orthologQuery(accession: $accession, assembly: $assembly) {\n assembly\n accession\n ortholog {\n stop\n start\n chromosome\n accession\n }\n }\n }\n"): (typeof documents)["\n query orthologTab($assembly: String!, $accession: [String!]) {\n orthologQuery(accession: $accession, assembly: $assembly) {\n assembly\n accession\n ortholog {\n stop\n start\n chromosome\n accession\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query nearbyGenomicFeatures($coordinates: [GenomicRangeInput!], $chromosome: String, $start: Int, $end: Int, $b: String!, $c: String!, $a: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $b, version: $version) {\n name\n id\n strand\n coordinates {\n chromosome\n start\n end\n }\n transcripts {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n\n cCREQuery(assembly: $c, coordinates: $coordinates) {\n accession\n coordinates {\n chromosome\n start\n end\n }\n group\n }\n\n snpQuery(coordinates: $coordinates, assembly: $a, common: true) {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n"): (typeof documents)["\n query nearbyGenomicFeatures($coordinates: [GenomicRangeInput!], $chromosome: String, $start: Int, $end: Int, $b: String!, $c: String!, $a: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $b, version: $version) {\n name\n id\n strand\n coordinates {\n chromosome\n start\n end\n }\n transcripts {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n\n cCREQuery(assembly: $c, coordinates: $coordinates) {\n accession\n coordinates {\n chromosome\n start\n end\n }\n group\n }\n\n snpQuery(coordinates: $coordinates, assembly: $a, common: true) {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query nearbyGenomicFeaturesNoSNPs($coordinates: [GenomicRangeInput!], $chromosome: String, $start: Int, $end: Int, $b: String!, $c: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $b, version: $version) {\n name\n id\n strand\n coordinates {\n chromosome\n start\n end\n }\n transcripts {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n\n cCREQuery(assembly: $c, coordinates: $coordinates) {\n accession\n coordinates {\n chromosome\n start\n end\n }\n group\n }\n }\n"): (typeof documents)["\n query nearbyGenomicFeaturesNoSNPs($coordinates: [GenomicRangeInput!], $chromosome: String, $start: Int, $end: Int, $b: String!, $c: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $b, version: $version) {\n name\n id\n strand\n coordinates {\n chromosome\n start\n end\n }\n transcripts {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n\n cCREQuery(assembly: $c, coordinates: $coordinates) {\n accession\n coordinates {\n chromosome\n start\n end\n }\n group\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query tfpeaks_1($assembly: String, $range: [ChromosomeRangeInput]!, $target: String) {\n peaks(assembly: $assembly, range: $range, target: $target) {\n peaks {\n chrom\n chrom_start\n chrom_end\n dataset {\n biosample\n accession\n target\n files(types: \"replicated_peaks\") {\n accession\n }\n }\n }\n }\n }\n"): (typeof documents)["\n query tfpeaks_1($assembly: String, $range: [ChromosomeRangeInput]!, $target: String) {\n peaks(assembly: $assembly, range: $range, target: $target) {\n peaks {\n chrom\n chrom_start\n chrom_end\n dataset {\n biosample\n accession\n target\n files(types: \"replicated_peaks\") {\n accession\n }\n }\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query tfpeaks_2($assembly: String, $range: [ChromosomeRangeInput]!, $species: String) {\n peaks(assembly: $assembly, range: $range) {\n peaks {\n chrom\n chrom_start\n chrom_end\n dataset {\n biosample\n accession\n target\n }\n }\n }\n peakDataset(species: $species) {\n partitionByTarget {\n target {\n name\n }\n counts {\n total\n }\n }\n }\n }\n"): (typeof documents)["\n query tfpeaks_2($assembly: String, $range: [ChromosomeRangeInput]!, $species: String) {\n peaks(assembly: $assembly, range: $range) {\n peaks {\n chrom\n chrom_start\n chrom_end\n dataset {\n biosample\n accession\n target\n }\n }\n }\n peakDataset(species: $species) {\n partitionByTarget {\n target {\n name\n }\n counts {\n total\n }\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query nearbyAndLinkedGenes(\n $accessions: [String!]!\n $assembly: String!\n $geneSearchStart: Int!\n $geneSearchEnd: Int!\n $geneSearchChrom: String!\n $geneVersion: Int!\n ) {\n nearbyGenes: gene(\n chromosome: $geneSearchChrom\n start: $geneSearchStart\n end: $geneSearchEnd\n assembly: $assembly\n version: $geneVersion\n ) {\n name\n id\n gene_type\n strand\n coordinates {\n chromosome\n start\n end\n }\n transcripts {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n linkedGenes: linkedGenesQuery(assembly: $assembly, accession: $accessions) {\n accession \n p_val\n gene\n geneid\n genetype\n method\n grnaid\n effectsize\n assay\n celltype\n experiment_accession\n tissue\n variantid\n source\n slope\n score\n displayname\n }\n }\n"): (typeof documents)["\n query nearbyAndLinkedGenes(\n $accessions: [String!]!\n $assembly: String!\n $geneSearchStart: Int!\n $geneSearchEnd: Int!\n $geneSearchChrom: String!\n $geneVersion: Int!\n ) {\n nearbyGenes: gene(\n chromosome: $geneSearchChrom\n start: $geneSearchStart\n end: $geneSearchEnd\n assembly: $assembly\n version: $geneVersion\n ) {\n name\n id\n gene_type\n strand\n coordinates {\n chromosome\n start\n end\n }\n transcripts {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n linkedGenes: linkedGenesQuery(assembly: $assembly, accession: $accessions) {\n accession \n p_val\n gene\n geneid\n genetype\n method\n grnaid\n effectsize\n assay\n celltype\n experiment_accession\n tissue\n variantid\n source\n slope\n score\n displayname\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query geneQuery($assembly: String!, $name_prefix: [String!], $limit: Int, $version: Int) {\n gene(assembly: $assembly, name_prefix: $name_prefix, limit: $limit, version: $version) {\n name\n id\n coordinates {\n start\n chromosome\n end\n }\n }\n } \n "): (typeof documents)["\n query geneQuery($assembly: String!, $name_prefix: [String!], $limit: Int, $version: Int) {\n gene(assembly: $assembly, name_prefix: $name_prefix, limit: $limit, version: $version) {\n name\n id\n coordinates {\n start\n chromosome\n end\n }\n }\n } \n "];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query tssRampage($gene: String!) {\n tssrampageQuery(genename: $gene) {\n start \n organ \n strand\n peakId\n biosampleName\n biosampleType\n biosampleSummary\n peakType\n expAccession\n value\n start\n end \n chrom \n genes {\n geneName\n locusType\n }\n }\n}"): (typeof documents)["\n query tssRampage($gene: String!) {\n tssrampageQuery(genename: $gene) {\n start \n organ \n strand\n peakId\n biosampleName\n biosampleType\n biosampleSummary\n peakType\n expAccession\n value\n start\n end \n chrom \n genes {\n geneName\n locusType\n }\n }\n}"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query ComputationalGeneLinks($accession: [String]!){\n ComputationalGeneLinksQuery(accession: $accession){\n gene: genename\n geneid\n genetype\n method\n celltype\n score\n methodregion\n fileaccession\n }\n }\n"): (typeof documents)["\n query ComputationalGeneLinks($accession: [String]!){\n ComputationalGeneLinksQuery(accession: $accession){\n gene: genename\n geneid\n genetype\n method\n celltype\n score\n methodregion\n fileaccession\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\nquery silencersQuery($accession: [String]!){\n silencersQuery(accession: $accession){\n silencer_studies\n }\n}\n"): (typeof documents)["\nquery silencersQuery($accession: [String]!){\n silencersQuery(accession: $accession){\n silencer_studies\n }\n}\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query cCRE_1($assembly: String!, $accession: [String!], $experiments: [String!]) {\n cCREQuery(assembly: $assembly, accession: $accession) {\n group\n zScores(experiments: $experiments) {\n experiment\n score\n }\n }\n }\n"): (typeof documents)["\n query cCRE_1($assembly: String!, $accession: [String!], $experiments: [String!]) {\n cCREQuery(assembly: $assembly, accession: $accession) {\n group\n zScores(experiments: $experiments) {\n experiment\n score\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query cCRE_2($assembly: String!, $accession: [String!]) {\n cCREQuery(assembly: $assembly, accession: $accession) {\n group\n dnase: maxZ(assay: \"dnase\")\n h3k4me3: maxZ(assay: \"h3k4me3\")\n h3k27ac: maxZ(assay: \"h3k27ac\")\n ctcf: maxZ(assay: \"ctcf\")\n atac: maxZ(assay: \"atac\")\n }\n }\n"): (typeof documents)["\n query cCRE_2($assembly: String!, $accession: [String!]) {\n cCREQuery(assembly: $assembly, accession: $accession) {\n group\n dnase: maxZ(assay: \"dnase\")\n h3k4me3: maxZ(assay: \"h3k4me3\")\n h3k27ac: maxZ(assay: \"h3k27ac\")\n ctcf: maxZ(assay: \"ctcf\")\n atac: maxZ(assay: \"atac\")\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query cytobands($assembly: String!, $chromosome: String) {\n cytoband(assembly: $assembly, chromosome: $chromosome) {\n stain\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n"): (typeof documents)["\n query cytobands($assembly: String!, $chromosome: String) {\n cytoband(assembly: $assembly, chromosome: $chromosome) {\n stain\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query biosamples_2 {\n human: ccREBiosampleQuery(assembly: \"grch38\") {\n biosamples {\n name\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\") \n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n mouse: ccREBiosampleQuery(assembly: \"mm10\") {\n biosamples {\n name\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n }\n"): (typeof documents)["\n query biosamples_2 {\n human: ccREBiosampleQuery(assembly: \"grch38\") {\n biosamples {\n name\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\") \n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n mouse: ccREBiosampleQuery(assembly: \"mm10\") {\n biosamples {\n name\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query s_2($chromosome: String, $start: Int, $end: Int, $assembly: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $assembly, version: $version) {\n name\n strand\n transcripts {\n name\n strand\n exons {\n coordinates {\n chromosome\n start\n end\n }\n }\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n }\n"): (typeof documents)["\n query s_2($chromosome: String, $start: Int, $end: Int, $assembly: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $assembly, version: $version) {\n name\n strand\n transcripts {\n name\n strand\n exons {\n coordinates {\n chromosome\n start\n end\n }\n }\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query BigRequests($bigRequests: [BigRequest!]!) {\n bigRequests(requests: $bigRequests) {\n data\n error {\n errortype\n message\n }\n }\n }\n"): (typeof documents)["\n query BigRequests($bigRequests: [BigRequest!]!) {\n bigRequests(requests: $bigRequests) {\n data\n error {\n errortype\n message\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query q_1($assembly: String!) {\n ccREBiosampleQuery(assembly: $assembly) {\n biosamples {\n name\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n }\n }\n }\n"): (typeof documents)["\n query q_1($assembly: String!) {\n ccREBiosampleQuery(assembly: $assembly) {\n biosamples {\n name\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query s_1($chromosome: String, $start: Int, $end: Int, $assembly: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $assembly, version: $version) {\n name\n strand\n transcripts {\n name\n strand\n exons {\n coordinates {\n chromosome\n start\n end\n }\n }\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n }\n"): (typeof documents)["\n query s_1($chromosome: String, $start: Int, $end: Int, $assembly: String!, $version: Int) {\n gene(chromosome: $chromosome, start: $start, end: $end, assembly: $assembly, version: $version) {\n name\n strand\n transcripts {\n name\n strand\n exons {\n coordinates {\n chromosome\n start\n end\n }\n }\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query geneTSS($assembly: String!, $name: [String!], $limit: Int, $version: Int) {\n gene(assembly: $assembly, name: $name, limit: $limit, version: $version) {\n name\n id\n coordinates {\n start\n chromosome\n end\n }\n strand\n transcripts {\n name\n coordinates {\n start\n end\n } \n }\n }\n } "): (typeof documents)["\n query geneTSS($assembly: String!, $name: [String!], $limit: Int, $version: Int) {\n gene(assembly: $assembly, name: $name, limit: $limit, version: $version) {\n name\n id\n coordinates {\n start\n chromosome\n end\n }\n strand\n transcripts {\n name\n coordinates {\n start\n end\n } \n }\n }\n } "];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query getlistofLinkedGenesCelltypes {\n linkedGenesCelltypes: getLinkedGenesCelltypes {\n celltype\n displayname\n method\n }\n }\n"): (typeof documents)["\n query getlistofLinkedGenesCelltypes {\n linkedGenesCelltypes: getLinkedGenesCelltypes {\n celltype\n displayname\n method\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query getGeneLocation1($name: String!, $assembly: String!, $version: Int!) {\n gene(name: [$name], assembly: $assembly, version: $version) {\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n"): (typeof documents)["\n query getGeneLocation1($name: String!, $assembly: String!, $version: Int!) {\n gene(name: [$name], assembly: $assembly, version: $version) {\n coordinates {\n chromosome\n start\n end\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query snpAutocompleteQuery($snpid: String!, $assembly: String!) {\n snpAutocompleteQuery(snpid: $snpid, assembly: $assembly) {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n } \n"): (typeof documents)["\n query snpAutocompleteQuery($snpid: String!, $assembly: String!) {\n snpAutocompleteQuery(snpid: $snpid, assembly: $assembly) {\n id\n coordinates {\n chromosome\n start\n end\n }\n }\n } \n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query getAcccessionCoords($accession: [String!], $assembly: String!) {\n cCREQuery(accession: $accession, assembly: $assembly) {\n accession\n coordinates {\n start\n end\n chromosome\n }\n }\n }\n"): (typeof documents)["\n query getAcccessionCoords($accession: [String!], $assembly: String!) {\n cCREQuery(accession: $accession, assembly: $assembly) {\n accession\n coordinates {\n start\n end\n chromosome\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query ccreSearchQuery_1(\n $accessions: [String!]\n $assembly: String!\n $cellType: String\n $coordinates: [GenomicRangeInput]\n $element_type: String\n $gene_all_start: Int\n $gene_all_end: Int\n $gene_pc_start: Int\n $gene_pc_end: Int\n $rank_ctcf_end: Float\n $rank_ctcf_start: Float\n $rank_dnase_end: Float\n $rank_dnase_start: Float\n $rank_enhancer_end: Float\n $rank_enhancer_start: Float\n $rank_promoter_end: Float\n $rank_promoter_start: Float\n $rank_atac_end: Float\n $rank_atac_start: Float\n $mammals_min: Float\n $mammals_max: Float\n $vertebrates_min: Float\n $vertebrates_max: Float\n $primates_min: Float\n $primates_max: Float\n $uuid: String\n $limit: Int\n $nearbygeneslimit: Int\n $nearbygenesdistancethreshold: Int\n ) {\n cCRESCREENSearch(\n assembly: $assembly\n accessions: $accessions\n cellType: $cellType\n coordinates: $coordinates\n element_type: $element_type\n gene_all_start: $gene_all_start\n gene_all_end: $gene_all_end\n gene_pc_start: $gene_pc_start\n gene_pc_end: $gene_pc_end\n rank_atac_end: $rank_atac_end\n rank_atac_start: $rank_atac_start\n rank_ctcf_end: $rank_ctcf_end\n rank_ctcf_start: $rank_ctcf_start\n rank_dnase_end: $rank_dnase_end\n rank_dnase_start: $rank_dnase_start\n rank_enhancer_end: $rank_enhancer_end\n rank_enhancer_start: $rank_enhancer_start\n rank_promoter_end: $rank_promoter_end\n rank_promoter_start: $rank_promoter_start\n mammals_min: $mammals_min\n mammals_max: $mammals_max\n vertebrates_min: $vertebrates_min\n vertebrates_max: $vertebrates_max\n primates_min: $primates_min\n primates_max: $primates_max\n uuid: $uuid\n limit: $limit\n nearbygeneslimit: $nearbygeneslimit\n nearbygenesdistancethreshold: $nearbygenesdistancethreshold\n ) {\n chrom\n start\n len\n pct\n vertebrates\n mammals\n primates\n ctcf_zscore\n dnase_zscore\n enhancer_zscore\n promoter_zscore\n atac_zscore\n ctspecific {\n ct\n dnase_zscore\n h3k4me3_zscore\n h3k27ac_zscore\n ctcf_zscore\n atac_zscore\n }\n info {\n accession\n isproximal\n concordant\n }\n nearestgenes {\n gene\n distance\n }\n }\n }\n"): (typeof documents)["\n query ccreSearchQuery_1(\n $accessions: [String!]\n $assembly: String!\n $cellType: String\n $coordinates: [GenomicRangeInput]\n $element_type: String\n $gene_all_start: Int\n $gene_all_end: Int\n $gene_pc_start: Int\n $gene_pc_end: Int\n $rank_ctcf_end: Float\n $rank_ctcf_start: Float\n $rank_dnase_end: Float\n $rank_dnase_start: Float\n $rank_enhancer_end: Float\n $rank_enhancer_start: Float\n $rank_promoter_end: Float\n $rank_promoter_start: Float\n $rank_atac_end: Float\n $rank_atac_start: Float\n $mammals_min: Float\n $mammals_max: Float\n $vertebrates_min: Float\n $vertebrates_max: Float\n $primates_min: Float\n $primates_max: Float\n $uuid: String\n $limit: Int\n $nearbygeneslimit: Int\n $nearbygenesdistancethreshold: Int\n ) {\n cCRESCREENSearch(\n assembly: $assembly\n accessions: $accessions\n cellType: $cellType\n coordinates: $coordinates\n element_type: $element_type\n gene_all_start: $gene_all_start\n gene_all_end: $gene_all_end\n gene_pc_start: $gene_pc_start\n gene_pc_end: $gene_pc_end\n rank_atac_end: $rank_atac_end\n rank_atac_start: $rank_atac_start\n rank_ctcf_end: $rank_ctcf_end\n rank_ctcf_start: $rank_ctcf_start\n rank_dnase_end: $rank_dnase_end\n rank_dnase_start: $rank_dnase_start\n rank_enhancer_end: $rank_enhancer_end\n rank_enhancer_start: $rank_enhancer_start\n rank_promoter_end: $rank_promoter_end\n rank_promoter_start: $rank_promoter_start\n mammals_min: $mammals_min\n mammals_max: $mammals_max\n vertebrates_min: $vertebrates_min\n vertebrates_max: $vertebrates_max\n primates_min: $primates_min\n primates_max: $primates_max\n uuid: $uuid\n limit: $limit\n nearbygeneslimit: $nearbygeneslimit\n nearbygenesdistancethreshold: $nearbygenesdistancethreshold\n ) {\n chrom\n start\n len\n pct\n vertebrates\n mammals\n primates\n ctcf_zscore\n dnase_zscore\n enhancer_zscore\n promoter_zscore\n atac_zscore\n ctspecific {\n ct\n dnase_zscore\n h3k4me3_zscore\n h3k27ac_zscore\n ctcf_zscore\n atac_zscore\n }\n info {\n accession\n isproximal\n concordant\n }\n nearestgenes {\n gene\n distance\n }\n }\n }\n"];
/**
* The gql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
export function gql(source: "\n query biosamples_3 {\n human: ccREBiosampleQuery(assembly: \"grch38\") {\n biosamples {\n name\n ontology\n lifeStage\n sampleType\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n mouse: ccREBiosampleQuery(assembly: \"mm10\") {\n biosamples {\n name\n ontology\n lifeStage\n sampleType\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n }\n"): (typeof documents)["\n query biosamples_3 {\n human: ccREBiosampleQuery(assembly: \"grch38\") {\n biosamples {\n name\n ontology\n lifeStage\n sampleType\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n mouse: ccREBiosampleQuery(assembly: \"mm10\") {\n biosamples {\n name\n ontology\n lifeStage\n sampleType\n displayname\n dnase: experimentAccession(assay: \"DNase\")\n h3k4me3: experimentAccession(assay: \"H3K4me3\")\n h3k27ac: experimentAccession(assay: \"H3K27ac\")\n ctcf: experimentAccession(assay: \"CTCF\")\n atac: experimentAccession(assay: \"ATAC\")\n dnase_signal: fileAccession(assay: \"DNase\")\n h3k4me3_signal: fileAccession(assay: \"H3K4me3\")\n h3k27ac_signal: fileAccession(assay: \"H3K27ac\")\n ctcf_signal: fileAccession(assay: \"CTCF\")\n atac_signal: fileAccession(assay: \"ATAC\")\n }\n }\n }\n"];
export function gql(source: string) {
return (documents as any)[source] ?? {};
}
export type DocumentType<TDocumentNode extends DocumentNode<any, any>> = TDocumentNode extends DocumentNode< infer TType, any> ? TType : never;