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update installation sequence
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.github/workflows/pr_check.yml

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@@ -47,10 +47,15 @@ jobs:
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- name: Query dependencies
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run: |
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BiocManager::install(c("covr", "BiocCheck", "waldronlab/HistoImagePlot", "waldronlab/imageTCGAutils"))
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BiocManager::install(c("covr", "BiocCheck", "waldronlab/imageTCGAutils"))
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saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
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shell: Rscript {0}
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- name: Install R Package
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run: |
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remotes::install_local(repos = BiocManager::repositories())
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shell: Rscript {0}
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- name: Cache R packages
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uses: actions/cache@v4
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with:
@@ -64,8 +69,8 @@ jobs:
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- name: Install Dependencies
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run: |
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BiocManager::install("waldronlab/HistoImagePlot", ask = FALSE, update = TRUE)
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remotes::install_deps(dependencies = TRUE, repos = BiocManager::repositories())
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BiocManager::install(ask = FALSE, update = TRUE)
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shell: Rscript {0}
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- name: Check Package

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