Skip to content

Commit 53566c0

Browse files
committed
Add installation instructions
1 parent bac8444 commit 53566c0

1 file changed

Lines changed: 24 additions & 2 deletions

File tree

README.md

Lines changed: 24 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -58,8 +58,30 @@ Check the wiki page [old retired notebooks](https://github.com/sokrypton/ColabFo
5858
- Where can I find the history of MSA Server Databases used in ColabFold?
5959
- You can view the database version history on the [MSA Server Database History](https://github.com/sokrypton/ColabFold/wiki/MSA-Server-Database-History) wiki page.
6060

61-
### Running locally
62-
For instructions on how to install ColabFold locally refer to [localcolabfold](https://github.com/YoshitakaMo/localcolabfold) or see our [wiki](https://github.com/sokrypton/ColabFold/wiki/Running-ColabFold-in-Docker) on how to run ColabFold within Docker.
61+
### Installation
62+
63+
For a one-step installer script that supports Linux, macOS, and Windows (WSL2), see [LocalColabFold](https://github.com/YoshitakaMo/localcolabfold).
64+
65+
Alternatively, ColabFold can be installed directly with `conda` and `pip`:
66+
67+
```shell
68+
conda create -n colabfold -c conda-forge -c bioconda python=3.13 kalign2=2.04 hhsuite=3.3.0 mmseqs2=18.8cc5c
69+
conda activate colabfold
70+
# With CUDA GPU support
71+
pip install colabfold[alphafold,openmm] jax[cuda] openmm[cuda12]
72+
# CPU only
73+
pip install colabfold[alphafold,openmm]
74+
# For colabfold_search only (no structure prediction)
75+
pip install colabfold
76+
```
77+
78+
A Docker image is also available:
79+
80+
```shell
81+
docker pull ghcr.io/sokrypton/colabfold:1.6.0-cuda12
82+
```
83+
84+
See our [wiki](https://github.com/sokrypton/ColabFold/wiki/Running-ColabFold-in-Docker) for more details on running ColabFold in Docker.
6385

6486
### Generating MSAs for small scale local structure/complex predictions using the MSA server
6587

0 commit comments

Comments
 (0)