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Refactor vcf_writer into a VcfWriter context-manager class #737

Refactor vcf_writer into a VcfWriter context-manager class

Refactor vcf_writer into a VcfWriter context-manager class #737

Triggered via pull request May 13, 2026 11:10
Status Success
Total duration 5m 1s
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ci.yml

on: pull_request
Matrix: Python tests
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Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: astral-sh/setup-uv@d0cc045d04ccac9d8b7881df0226f9e82c39688e. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Packaging
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: astral-sh/setup-uv@d0cc045d04ccac9d8b7881df0226f9e82c39688e. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Test Azure emulator
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: astral-sh/setup-uv@d0cc045d04ccac9d8b7881df0226f9e82c39688e. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Python tests (macos-14, 3.11)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: astral-sh/setup-uv@d0cc045d04ccac9d8b7881df0226f9e82c39688e. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Python tests (macos-14, 3.13)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: astral-sh/setup-uv@d0cc045d04ccac9d8b7881df0226f9e82c39688e. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
CPython interface tests
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: astral-sh/setup-uv@d0cc045d04ccac9d8b7881df0226f9e82c39688e. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Python tests (ubuntu-latest, 3.13)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: astral-sh/setup-uv@d0cc045d04ccac9d8b7881df0226f9e82c39688e. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Python tests (ubuntu-latest, 3.11)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: astral-sh/setup-uv@d0cc045d04ccac9d8b7881df0226f9e82c39688e. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Python tests (windows-latest, 3.13)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: astral-sh/setup-uv@d0cc045d04ccac9d8b7881df0226f9e82c39688e. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Python tests (windows-latest, 3.13)
NOTICE: windows-2025 requests are being redirected to windows-2025-vs2026 by May 12, 2026