Skip to content

add_elements not adding elements using Interactive #362

@lguerard

Description

@lguerard

Hi,

I'm trying to use this package to show my sopa results but can't get my elements to be shown in napari through code.

Here is my code :

image_key = list(sdata.images.keys())[0]
points_key = list(sdata.points.keys())[0] 

interactive = Interactive(sdata, headless=True)
interactive.add_element(image_key, "global", True)
interactive.add_element(points_key, "global", True)
interactive.add_element("cellpose_boundaries", "global", True)
interactive.run()

This loads the image but then nothing else.
The notebook shows

INFO: Please wait for the current operation to finish.
INFO: Please wait for the current operation to finish.
2025-05-13 15:56:57.577 | DEBUG    | napari_spatialdata._view:_on_layer_update:569 - Updating layer.
2025-05-13 15:56:57.578 | DEBUG    | napari_spatialdata._view:_on_layer_update:569 - Updating layer.

but it never finishes. Clicking on it through the GUI is super fast though. Any ideas why ?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions