more fixes

Author: zingale

pyro/compressible_fv4/_defaults

@@ -23,6 +23,7 @@ grav = 0.0                ; gravitational acceleration (in y-direction)
 
 riemann = CGF
 
+small_dens = -1.e200      ; minimum allowed density
 
 [sponge]
 do_sponge = 0             ; do we include a sponge source term

pyro/compressible_fv4/simulation.py

@@ -19,7 +19,7 @@ def substep(self, myd):
         compute the advective source term for the given state
         """
 
-        self.clean_state(myd)
+        self.clean_state(myd.data)
 
         myg = myd.grid
 

pyro/compressible_rk/_defaults

@@ -25,6 +25,7 @@ riemann = HLLC            ; HLLC or CGF
 
 well_balanced = 0         ; use a well-balanced scheme to keep the model in hydrostatic equilibrium
 
+small_dens = -1.e200      ; minimum allowed density
 
 [sponge]
 do_sponge = 0             ; do we include a sponge source term

pyro/compressible_rk/simulation.py

@@ -15,7 +15,7 @@ def substep(self, myd):
         conservative state defined as part of myd
         """
 
-        self.clean_state(myd)
+        self.clean_state(myd.data)
 
         myg = myd.grid
 

pyro/compressible_sdc/_defaults

@@ -23,6 +23,7 @@ grav = 0.0                ; gravitational acceleration (in y-direction)
 
 riemann = CGF
 
+small_dens = -1.e200      ; minimum allowed density
 
 [sponge]
 do_sponge = 0             ; do we include a sponge source term