NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(CellDimPlot,H5File)
S3method(CellDimPlot,Seurat)
S3method(CellDimPlot,character)
S3method(CellDimPlot,giotto)
S3method(CellStatPlot,H5File)
S3method(CellStatPlot,Seurat)
S3method(CellStatPlot,character)
S3method(CellStatPlot,data.frame)
S3method(CellStatPlot,giotto)
S3method(CellVelocityPlot,H5File)
S3method(CellVelocityPlot,Seurat)
S3method(CellVelocityPlot,character)
S3method(CellVelocityPlot,giotto)
S3method(FeatureStatPlot,H5File)
S3method(FeatureStatPlot,Seurat)
S3method(FeatureStatPlot,character)
S3method(FeatureStatPlot,giotto)
S3method(SpatDimPlot,Seurat)
S3method(SpatDimPlot,giotto)
S3method(SpatFeaturePlot,Seurat)
S3method(SpatFeaturePlot,giotto)
export(CCCPlot)
export(CellDimPlot)
export(CellStatPlot)
export(CellVelocityPlot)
export(ClonalAbundancePlot)
export(ClonalCompositionPlot)
export(ClonalDiversityPlot)
export(ClonalGeneUsagePlot)
export(ClonalKmerPlot)
export(ClonalLengthPlot)
export(ClonalOverlapPlot)
export(ClonalPositionalPlot)
export(ClonalRarefactionPlot)
export(ClonalResidencyPlot)
export(ClonalStatPlot)
export(ClonalVolumePlot)
export(ClustreePlot)
export(EnrichmentPlot)
export(FeatureStatPlot)
export(GSEAPlot)
export(GSEASummaryPlot)
export(MarkersPlot)
export(SCPlotterChat)
export(SpatDimPlot)
export(SpatFeaturePlot)
export(and)
export(eq)
export(ge)
export(gt)
export(le)
export(lt)
export(ne)
export(or)
export(sel)
export(shared)
export(top)
export(uniq)
import(R6)
importFrom(SeuratObject,"Idents<-")
importFrom(SeuratObject,DefaultDimReduc)
importFrom(SeuratObject,Embeddings)
importFrom(SeuratObject,GetAssayData)
importFrom(SeuratObject,Graphs)
importFrom(SeuratObject,Idents)
importFrom(SeuratObject,Reductions)
importFrom(circlize,colorRamp2)
importFrom(dplyr,"%>%")
importFrom(dplyr,across)
importFrom(dplyr,all_of)
importFrom(dplyr,arrange)
importFrom(dplyr,case_when)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,ends_with)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,first)
importFrom(dplyr,group_by)
importFrom(dplyr,group_modify)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,n_distinct)
importFrom(dplyr,pull)
importFrom(dplyr,reframe)
importFrom(dplyr,rename)
importFrom(dplyr,rename_with)
importFrom(dplyr,row_number)
importFrom(dplyr,select)
importFrom(dplyr,slice_head)
importFrom(dplyr,slice_max)
importFrom(dplyr,slice_min)
importFrom(dplyr,slice_sample)
importFrom(dplyr,starts_with)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(ggnewscale,new_scale_fill)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,unit)
importFrom(ggplot2,waiver)
importFrom(plotthis,AreaPlot)
importFrom(plotthis,BarPlot)
importFrom(plotthis,BoxPlot)
importFrom(plotthis,ChordPlot)
importFrom(plotthis,CircosPlot)
importFrom(plotthis,CorPairsPlot)
importFrom(plotthis,CorPlot)
importFrom(plotthis,DensityPlot)
importFrom(plotthis,DimPlot)
importFrom(plotthis,DotPlot)
importFrom(plotthis,EnrichMap)
importFrom(plotthis,EnrichNetwork)
importFrom(plotthis,FeatureDimPlot)
importFrom(plotthis,GSEAPlot)
importFrom(plotthis,GSEASummaryPlot)
importFrom(plotthis,Heatmap)
importFrom(plotthis,Histogram)
importFrom(plotthis,LinePlot)
importFrom(plotthis,LollipopPlot)
importFrom(plotthis,Network)
importFrom(plotthis,PieChart)
importFrom(plotthis,RadarPlot)
importFrom(plotthis,RarefactionPlot)
importFrom(plotthis,RidgePlot)
importFrom(plotthis,RingPlot)
importFrom(plotthis,SankeyPlot)
importFrom(plotthis,ScatterPlot)
importFrom(plotthis,SpatImagePlot)
importFrom(plotthis,SpatMasksPlot)
importFrom(plotthis,SpatPointsPlot)
importFrom(plotthis,SpatShapesPlot)
importFrom(plotthis,SpiderPlot)
importFrom(plotthis,TrendPlot)
importFrom(plotthis,UpsetPlot)
importFrom(plotthis,VelocityPlot)
importFrom(plotthis,VennDiagram)
importFrom(plotthis,ViolinPlot)
importFrom(plotthis,WordCloudPlot)
importFrom(plotthis,palette_this)
importFrom(rlang,"%||%")
importFrom(rlang,":=")
importFrom(rlang,as_label)
importFrom(rlang,caller_env)
importFrom(rlang,enexpr)
importFrom(rlang,enquo)
importFrom(rlang,env_get)
importFrom(rlang,env_has)
importFrom(rlang,expr_name)
importFrom(rlang,parse_expr)
importFrom(rlang,sym)
importFrom(rlang,syms)
importFrom(scRepertoire,clonalAbundance)
importFrom(scRepertoire,clonalDiversity)
importFrom(scRepertoire,clonalHomeostasis)
importFrom(scRepertoire,clonalLength)
importFrom(scRepertoire,clonalOverlap)
importFrom(scRepertoire,clonalProportion)
importFrom(scRepertoire,clonalQuant)
importFrom(scRepertoire,clonalScatter)
importFrom(scRepertoire,percentAA)
importFrom(scRepertoire,percentKmer)
importFrom(scRepertoire,positionalEntropy)
importFrom(scRepertoire,positionalProperty)
importFrom(scRepertoire,vizGenes)
importFrom(stats,as.dist)
importFrom(stats,cor.test)
importFrom(stats,quantile)
importFrom(stringr,str_wrap)
importFrom(tidyr,complete)
importFrom(tidyr,drop_na)
importFrom(tidyr,full_seq)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,replace_na)
importFrom(tidyr,separate)
importFrom(tidyr,unite)
importFrom(tools,parse_Rd)
importFrom(utils,combn)
importFrom(utils,getFromNamespace)
importFrom(utils,help)