Skip to content

It's now difficult to get pfam full alignments #1859

@jamesmkrieger

Description

@jamesmkrieger

Only seed alignments are available together with the families. To access full alignments, we need to download the a big gz file containing all of them together from the full release from ftp e.g. https://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam37.0/ and query it.

For now, I have made seed the default in #1858, but we will also need new code similar to what we have for pdb clusters.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions