How to set the path for ProDy in VMD #2166
kiran923
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VMD has clearly found ProDy as it is complaining about the usage instead of asking you to set the path We can't help you if you don't give us more details about what you were trying to do |
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Hello @kiran923, please provide more details about your workflow with ProDy in VMD so that we can be of assistance. We are happy to help. If your issue is resolved, please let us know as well. Thanks. |
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how to set the path for ProDy in VMD

usage: prody.exe [-h] [-c] [-v]$::NMWiz::pybin $ ::NMWiz::prody anm --quiet -s $selstr {*}$args "$pdbfn""
{anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy,clustenm}
...
prody.exe: error: argument {anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy,clustenm}: invalid choice: 'C:/Users/DST-SERB/AppData/Local/Programs/Python/Python310/Scripts/prody.exe' (choose from 'anm', 'gnm', 'pca', 'eda', 'align', 'blast', 'biomol', 'catdcd', 'contacts', 'fetch', 'select', 'energy', 'clustenm')
usage: prody.exe [-h] [-c] [-v]
{anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy,clustenm}
...
prody.exe: error: argument {anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy,clustenm}: invalid choice: 'C:/Users/DST-SERB/AppData/Local/Programs/Python/Python310/Scripts/prody.exe' (choose from 'anm', 'gnm', 'pca', 'eda', 'align', 'blast', 'biomol', 'catdcd', 'contacts', 'fetch', 'select', 'energy', 'clustenm')
while executing
"exec
(procedure "::NMWiz::prodySubmitANMjob" line 42)
invoked from within
"::NMWiz::prodySubmitANMjob"
(procedure "::NMWiz::prodySubmitJob" line 22)
invoked from within
"::NMWiz::prodySubmitJob"
invoked from within
".nmwizprody.submitFrame.prodySubmit invoke"
("uplevel" body line 1)
invoked from within
"uplevel #0 [list $w invoke]"
(procedure "tk::ButtonUp" line 24)
invoked from within
"tk::ButtonUp .nmwizprody.submitFrame.prodySubmit"
(command bound to event)
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