Skip to content

Commit 3b2df27

Browse files
BrapiCoordinatorSelbygithub-actions[bot]
BrapiCoordinatorSelby
authored and
github-actions[bot]
committed
Apply automatic changes
1 parent f8339a7 commit 3b2df27

File tree

8 files changed

+627
-794
lines changed

8 files changed

+627
-794
lines changed

‎Specification/Generated/BrAPI-Core.yaml‎

Lines changed: 1 addition & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -1778,7 +1778,7 @@ components:
17781778
trialPUI:
17791779
type: string
17801780
description: License and citation information for the data in this trial
1781-
EnvironmentParameters:
1781+
EnvironmentParameter:
17821782
required:
17831783
- description
17841784
- environmentParametersDbId
@@ -2371,10 +2371,6 @@ components:
23712371
type: string
23722372
endDate:
23732373
type: string
2374-
environmentParameterDbIds:
2375-
type: array
2376-
items:
2377-
type: string
23782374
experimentalDesign:
23792375
$ref: "#/components/schemas/ExperimentalDesign"
23802376
growthFacility:
@@ -2442,10 +2438,6 @@ components:
24422438
type: string
24432439
endDate:
24442440
type: string
2445-
environmentParameterDbIds:
2446-
type: array
2447-
items:
2448-
type: string
24492441
experimentalDesign:
24502442
$ref: "#/components/schemas/ExperimentalDesign"
24512443
growthFacility:

‎Specification/Generated/BrAPI-Genotyping.yaml‎

Lines changed: 24 additions & 40 deletions
Original file line numberDiff line numberDiff line change
@@ -2982,6 +2982,7 @@ components:
29822982
\ should follow the VCF standard "
29832983
Method:
29842984
required:
2985+
- methodDbId
29852986
- methodName
29862987
type: object
29872988
properties:
@@ -3072,49 +3073,11 @@ components:
30723073
positionCoordinateX:
30733074
type: string
30743075
positionCoordinateXType:
3075-
type: string
3076-
description: "The type of positional coordinate used. Must be one of the\
3077-
\ following values \n\nLONGITUDE - ISO 6709 standard, WGS84 geodetic datum.\
3078-
\ See 'Location Coordinate Encoding' for details \n\nLATITUDE - ISO 6709\
3079-
\ standard, WGS84 geodetic datum. See 'Location Coordinate Encoding' for\
3080-
\ details \n\nPLANTED_ROW - The physical planted row number \n\nPLANTED_INDIVIDUAL\
3081-
\ - The physical counted number, could be independent or within a planted\
3082-
\ row \n\nGRID_ROW - The row index number of a square grid overlay \n\n\
3083-
GRID_COL - The column index number of a square grid overlay \n\nMEASURED_ROW\
3084-
\ - The distance in meters from a defined 0-th row \n\nMEASURED_COL -\
3085-
\ The distance in meters from a defined 0-th column "
3086-
enum:
3087-
- LONGITUDE
3088-
- LATITUDE
3089-
- PLANTED_ROW
3090-
- PLANTED_INDIVIDUAL
3091-
- GRID_ROW
3092-
- GRID_COL
3093-
- MEASURED_ROW
3094-
- MEASURED_COL
3076+
$ref: "#/components/schemas/PositionCoordinateType"
30953077
positionCoordinateY:
30963078
type: string
30973079
positionCoordinateYType:
3098-
type: string
3099-
description: "The type of positional coordinate used. Must be one of the\
3100-
\ following values \n\nLONGITUDE - ISO 6709 standard, WGS84 geodetic datum.\
3101-
\ See 'Location Coordinate Encoding' for details \n\nLATITUDE - ISO 6709\
3102-
\ standard, WGS84 geodetic datum. See 'Location Coordinate Encoding' for\
3103-
\ details \n\nPLANTED_ROW - The physical planted row number \n\nPLANTED_INDIVIDUAL\
3104-
\ - The physical counted number, could be independent or within a planted\
3105-
\ row \n\nGRID_ROW - The row index number of a square grid overlay \n\n\
3106-
GRID_COL - The column index number of a square grid overlay \n\nMEASURED_ROW\
3107-
\ - The distance in meters from a defined 0-th row \n\nMEASURED_COL -\
3108-
\ The distance in meters from a defined 0-th column "
3109-
enum:
3110-
- LONGITUDE
3111-
- LATITUDE
3112-
- PLANTED_ROW
3113-
- PLANTED_INDIVIDUAL
3114-
- GRID_ROW
3115-
- GRID_COL
3116-
- MEASURED_ROW
3117-
- MEASURED_COL
3080+
$ref: "#/components/schemas/PositionCoordinateType"
31183081
description: All positional and layout information related to this Observation
31193082
Unit
31203083
Ontology:
@@ -3321,6 +3284,27 @@ components:
33213284
\ etc. Whatever the container is, the Samples in a Plate should be related\
33223285
\ by the same physical space, though they may or may not be related as part\
33233286
\ of the same experiment or analysis."
3287+
PositionCoordinateType:
3288+
type: string
3289+
description: "The type of positional coordinate. Must be one of the following\
3290+
\ values \n\nLONGITUDE - ISO 6709 standard, WGS84 geodetic datum. See 'Location\
3291+
\ Coordinate Encoding' for details \n\nLATITUDE - ISO 6709 standard, WGS84\
3292+
\ geodetic datum. See 'Location Coordinate Encoding' for details \n\nPLANTED_ROW\
3293+
\ - The physical planted row number \n\nPLANTED_INDIVIDUAL - The physical\
3294+
\ counted number, could be independent or within a planted row \n\nGRID_ROW\
3295+
\ - The row index number of a square grid overlay \n\nGRID_COL - The column\
3296+
\ index number of a square grid overlay \n\nMEASURED_ROW - The distance in\
3297+
\ meters from a defined 0-th row \n\nMEASURED_COL - The distance in meters\
3298+
\ from a defined 0-th column "
3299+
enum:
3300+
- LONGITUDE
3301+
- LATITUDE
3302+
- PLANTED_ROW
3303+
- PLANTED_INDIVIDUAL
3304+
- GRID_ROW
3305+
- GRID_COL
3306+
- MEASURED_ROW
3307+
- MEASURED_COL
33243308
Reference:
33253309
required:
33263310
- referenceDbId

‎Specification/Generated/BrAPI-Germplasm.yaml‎

Lines changed: 9 additions & 42 deletions
Original file line numberDiff line numberDiff line change
@@ -1764,7 +1764,9 @@ components:
17641764
type: string
17651765
crossName:
17661766
type: string
1767-
description: A custom attributes associated with a cross
1767+
description: "A custom attribute associated with a cross. For example, if the\
1768+
\ crossing event occurred on a humid day, a user might record 'crossAttributeName':'Relative\
1769+
\ Humidity', 'crossAttributeValue':'80%'"
17681770
CrossNewRequest:
17691771
required:
17701772
- crossDbId
@@ -2081,6 +2083,7 @@ components:
20812083
required:
20822084
- attributeDbId
20832085
- attributeName
2086+
- methodDbId
20842087
- methodName
20852088
- scaleDbId
20862089
- scaleName
@@ -2146,6 +2149,7 @@ components:
21462149
required:
21472150
- attributeDbId
21482151
- attributeName
2152+
- methodDbId
21492153
- methodName
21502154
- scaleDbId
21512155
- scaleName
@@ -2482,6 +2486,7 @@ components:
24822486
- samples
24832487
Method:
24842488
required:
2489+
- methodDbId
24852490
- methodName
24862491
type: object
24872492
properties:
@@ -2550,49 +2555,11 @@ components:
25502555
positionCoordinateX:
25512556
type: string
25522557
positionCoordinateXType:
2553-
type: string
2554-
description: "The type of positional coordinate used. Must be one of the\
2555-
\ following values \n\nLONGITUDE - ISO 6709 standard, WGS84 geodetic datum.\
2556-
\ See 'Location Coordinate Encoding' for details \n\nLATITUDE - ISO 6709\
2557-
\ standard, WGS84 geodetic datum. See 'Location Coordinate Encoding' for\
2558-
\ details \n\nPLANTED_ROW - The physical planted row number \n\nPLANTED_INDIVIDUAL\
2559-
\ - The physical counted number, could be independent or within a planted\
2560-
\ row \n\nGRID_ROW - The row index number of a square grid overlay \n\n\
2561-
GRID_COL - The column index number of a square grid overlay \n\nMEASURED_ROW\
2562-
\ - The distance in meters from a defined 0-th row \n\nMEASURED_COL -\
2563-
\ The distance in meters from a defined 0-th column "
2564-
enum:
2565-
- LONGITUDE
2566-
- LATITUDE
2567-
- PLANTED_ROW
2568-
- PLANTED_INDIVIDUAL
2569-
- GRID_ROW
2570-
- GRID_COL
2571-
- MEASURED_ROW
2572-
- MEASURED_COL
2558+
$ref: "#/components/schemas/PositionCoordinateType"
25732559
positionCoordinateY:
25742560
type: string
25752561
positionCoordinateYType:
2576-
type: string
2577-
description: "The type of positional coordinate used. Must be one of the\
2578-
\ following values \n\nLONGITUDE - ISO 6709 standard, WGS84 geodetic datum.\
2579-
\ See 'Location Coordinate Encoding' for details \n\nLATITUDE - ISO 6709\
2580-
\ standard, WGS84 geodetic datum. See 'Location Coordinate Encoding' for\
2581-
\ details \n\nPLANTED_ROW - The physical planted row number \n\nPLANTED_INDIVIDUAL\
2582-
\ - The physical counted number, could be independent or within a planted\
2583-
\ row \n\nGRID_ROW - The row index number of a square grid overlay \n\n\
2584-
GRID_COL - The column index number of a square grid overlay \n\nMEASURED_ROW\
2585-
\ - The distance in meters from a defined 0-th row \n\nMEASURED_COL -\
2586-
\ The distance in meters from a defined 0-th column "
2587-
enum:
2588-
- LONGITUDE
2589-
- LATITUDE
2590-
- PLANTED_ROW
2591-
- PLANTED_INDIVIDUAL
2592-
- GRID_ROW
2593-
- GRID_COL
2594-
- MEASURED_ROW
2595-
- MEASURED_COL
2562+
$ref: "#/components/schemas/PositionCoordinateType"
25962563
description: All positional and layout information related to this Observation
25972564
Unit
25982565
OntologyReference:
@@ -2749,7 +2716,7 @@ components:
27492716
type: boolean
27502717
pollinationTimeStamp:
27512718
type: string
2752-
description: A pollination event that occurred for this cross
2719+
description: A Pollination Event that was used or attempted for a Cross.
27532720
Scale:
27542721
required:
27552722
- scaleDbId

‎Specification/Generated/BrAPI-Phenotyping.yaml‎

Lines changed: 34 additions & 45 deletions
Original file line numberDiff line numberDiff line change
@@ -1875,6 +1875,8 @@ components:
18751875
type: string
18761876
type:
18771877
type: string
1878+
description: "The type of documentation, which can be OBO Foundry, an RDF\
1879+
\ term or a webpage."
18781880
enum:
18791881
- OBO
18801882
- RDF
@@ -1950,8 +1952,10 @@ components:
19501952
type: array
19511953
items:
19521954
type: string
1953-
description: An object describing additional event parameters. Each of the following
1954-
accepts a human-readable value or URI
1955+
description: "Additional metadata to describe an event, based on the ICASA standard\
1956+
\ model. For example, 'Tillage Implement' (tiimp), 'Tillage Depth' (tidep),\
1957+
\ and 'Tillage Mix Effectiveness' (timix) might all be recorded parameters\
1958+
\ for a Tillage event."
19551959
ExperimentalDesign:
19561960
type: object
19571961
properties:
@@ -2344,6 +2348,7 @@ components:
23442348
MethodNewRequest:
23452349
required:
23462350
- methodDbId
2351+
- methodDbId
23472352
- methodName
23482353
type: object
23492354
properties:
@@ -2489,9 +2494,8 @@ components:
24892494
type: string
24902495
observationUnitPUI:
24912496
type: string
2492-
description: "The type of treatment/factor. ex. 'fertilizer', 'inoculation',\
2493-
\ 'irrigation', etc. MIAPPE V1.1 (DM-61) Experimental Factor type - Name/Acronym\
2494-
\ of the experimental factor."
2497+
description: A Treatment applied an Observation Unit at a given Modality/Level
2498+
for a specific Factor.
24952499
ObservationUnit:
24962500
required:
24972501
- observationUnitDbId
@@ -2677,49 +2681,11 @@ components:
26772681
positionCoordinateX:
26782682
type: string
26792683
positionCoordinateXType:
2680-
type: string
2681-
description: "The type of positional coordinate used. Must be one of the\
2682-
\ following values \n\nLONGITUDE - ISO 6709 standard, WGS84 geodetic datum.\
2683-
\ See 'Location Coordinate Encoding' for details \n\nLATITUDE - ISO 6709\
2684-
\ standard, WGS84 geodetic datum. See 'Location Coordinate Encoding' for\
2685-
\ details \n\nPLANTED_ROW - The physical planted row number \n\nPLANTED_INDIVIDUAL\
2686-
\ - The physical counted number, could be independent or within a planted\
2687-
\ row \n\nGRID_ROW - The row index number of a square grid overlay \n\n\
2688-
GRID_COL - The column index number of a square grid overlay \n\nMEASURED_ROW\
2689-
\ - The distance in meters from a defined 0-th row \n\nMEASURED_COL -\
2690-
\ The distance in meters from a defined 0-th column "
2691-
enum:
2692-
- LONGITUDE
2693-
- LATITUDE
2694-
- PLANTED_ROW
2695-
- PLANTED_INDIVIDUAL
2696-
- GRID_ROW
2697-
- GRID_COL
2698-
- MEASURED_ROW
2699-
- MEASURED_COL
2684+
$ref: "#/components/schemas/PositionCoordinateType"
27002685
positionCoordinateY:
27012686
type: string
27022687
positionCoordinateYType:
2703-
type: string
2704-
description: "The type of positional coordinate used. Must be one of the\
2705-
\ following values \n\nLONGITUDE - ISO 6709 standard, WGS84 geodetic datum.\
2706-
\ See 'Location Coordinate Encoding' for details \n\nLATITUDE - ISO 6709\
2707-
\ standard, WGS84 geodetic datum. See 'Location Coordinate Encoding' for\
2708-
\ details \n\nPLANTED_ROW - The physical planted row number \n\nPLANTED_INDIVIDUAL\
2709-
\ - The physical counted number, could be independent or within a planted\
2710-
\ row \n\nGRID_ROW - The row index number of a square grid overlay \n\n\
2711-
GRID_COL - The column index number of a square grid overlay \n\nMEASURED_ROW\
2712-
\ - The distance in meters from a defined 0-th row \n\nMEASURED_COL -\
2713-
\ The distance in meters from a defined 0-th column "
2714-
enum:
2715-
- LONGITUDE
2716-
- LATITUDE
2717-
- PLANTED_ROW
2718-
- PLANTED_INDIVIDUAL
2719-
- GRID_ROW
2720-
- GRID_COL
2721-
- MEASURED_ROW
2722-
- MEASURED_COL
2688+
$ref: "#/components/schemas/PositionCoordinateType"
27232689
description: All positional and layout information related to this Observation
27242690
Unit
27252691
ObservationUnitSearchRequest:
@@ -2732,6 +2698,7 @@ components:
27322698
\ but it could include things like Fields, Blocks, or Samples."
27332699
ObservationVariable:
27342700
required:
2701+
- methodDbId
27352702
- methodName
27362703
- observationVariableDbId
27372704
- observationVariableName
@@ -2786,6 +2753,7 @@ components:
27862753
type: string
27872754
ObservationVariableNewRequest:
27882755
required:
2756+
- methodDbId
27892757
- methodName
27902758
- observationVariableDbId
27912759
- observationVariableDbId
@@ -2940,6 +2908,27 @@ components:
29402908
- SELF
29412909
- POPULATION
29422910
- CLONAL
2911+
PositionCoordinateType:
2912+
type: string
2913+
description: "The type of positional coordinate. Must be one of the following\
2914+
\ values \n\nLONGITUDE - ISO 6709 standard, WGS84 geodetic datum. See 'Location\
2915+
\ Coordinate Encoding' for details \n\nLATITUDE - ISO 6709 standard, WGS84\
2916+
\ geodetic datum. See 'Location Coordinate Encoding' for details \n\nPLANTED_ROW\
2917+
\ - The physical planted row number \n\nPLANTED_INDIVIDUAL - The physical\
2918+
\ counted number, could be independent or within a planted row \n\nGRID_ROW\
2919+
\ - The row index number of a square grid overlay \n\nGRID_COL - The column\
2920+
\ index number of a square grid overlay \n\nMEASURED_ROW - The distance in\
2921+
\ meters from a defined 0-th row \n\nMEASURED_COL - The distance in meters\
2922+
\ from a defined 0-th column "
2923+
enum:
2924+
- LONGITUDE
2925+
- LATITUDE
2926+
- PLANTED_ROW
2927+
- PLANTED_INDIVIDUAL
2928+
- GRID_ROW
2929+
- GRID_COL
2930+
- MEASURED_ROW
2931+
- MEASURED_COL
29432932
Scale:
29442933
required:
29452934
- scaleDbId

0 commit comments

Comments
 (0)