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@pfizer-opensource Pfizer Open Source

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    60 repositories

    • scikit-digital-health

      Public
      Python package for the processing and analysis of Inertial Measurement Unit Data
      pythonsensorswearables
      pythonsensorswearablesactigraphyimu-sensor
      Python
      •
      MIT License
      •39•109•3•2•Updated Sep 3, 2026Sep 3, 2026

    • phenotype_reversion

      Public
      repository for MLCS + IMRU publication on phenotype reversion with single cell foundation models
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Aug 25, 2026Aug 25, 2026

    • zippeR

      Public
      Tools for Working with ZIP Codes, ZCTAs, and 3-digit ZCTAs (R package)
      R
      •
      Apache License 2.0
      •1•15•14•0•Updated Aug 13, 2026Aug 13, 2026

    • deprivateR

      Public
      Tools for calculating and visualizing measures of deprivation for social determinants of health research in the United States (R package)
      R
      •
      Apache License 2.0
      •1•4•10•0•Updated Aug 6, 2026Aug 6, 2026

    • headroom

      Public
      Compress tool outputs, logs, files, and RAG chunks before they reach the LLM. 20% fewer tokens for coding agents, 60-95% fewer tokens for JSON, same answers. Li…
      Python
      •
      Apache License 2.0
      •5.5k•0•0•0•Updated Jul 28, 2026Jul 28, 2026

    • SAND

      Public
      Python
      •
      Apache License 2.0
      •5•32•2•0•Updated Jul 27, 2026Jul 27, 2026

    • pharma-skills

      Public
      A collection of agent skills for BioPharma use cases GSDBench Intake https://rconsortium.github.io/pharma-skills/gsdbench-intake/
      Python
      •25•0•0•0•Updated Jul 25, 2026Jul 25, 2026

    • docker_pharmaverse

      Public
      Fork of Pharmaverse's docker container setup
      Dockerfile
      •
      Apache License 2.0
      •2•0•0•0•Updated Jul 8, 2026Jul 8, 2026

    • EpiTune

      Public
      Python
      •
      Apache License 2.0
      •1•5•3•1•Updated Jun 29, 2026Jun 29, 2026

    • Open-Hotgenes

      Public
      R
      •
      Apache License 2.0
      •0•3•0•1•Updated Jun 25, 2026Jun 25, 2026

    • rsv-qsp-model-CPT-PSP

      Public
      MATLAB
      •
      Apache License 2.0
      •1•0•0•0•Updated Jun 11, 2026Jun 11, 2026

    • leucine-systems-model-CPT-PSP

      Public
      Julia
      •
      Apache License 2.0
      •0•0•1•0•Updated Jun 1, 2026Jun 1, 2026

    • ISG_simulator

      Public
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated May 15, 2026May 15, 2026

    • pfaster

      Public
      pneumococcal FASTA serotype calling
      Python
      •
      Apache License 2.0
      •2•6•0•1•Updated May 5, 2026May 5, 2026

    • probing-concepts-release

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 4, 2026May 4, 2026

    • pilot-sbdd

      Public
      Official implementation of the pre-print "Coupled Fragment-Based Generative Modeling with Stochastic Interpolants" by Tuan Le, Yanfei Guan, Djork-Arné Clevert a…
      generative-modelsstructure-based-drug-designstochastic-interpolants
      generative-modelsstructure-based-drug-designstochastic-interpolantsfragment-based-design
      Jupyter Notebook
      •
      Other
      •1•8•0•0•Updated Apr 28, 2026Apr 28, 2026

    • css-zoomap-open

      Public
      R
      •
      Apache License 2.0
      •0•0•1•0•Updated Mar 30, 2026Mar 30, 2026

    • carver

      Public
      Clinical Analysis Reporting and Visualization Ensemble (in R)
      R
      •
      Apache License 2.0
      •4•6•4•1•Updated Mar 13, 2026Mar 13, 2026

    • Dataset-JSON-1.1-Interface

      Public
      CSS
      •
      Apache License 2.0
      •0•1•0•1•Updated Feb 20, 2026Feb 20, 2026

    • tio2-sentiment-analysis

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 5, 2026Feb 5, 2026

    • HLAIIPred

      Public
      Cross-Attention Mechanism for Modeling the Interaction of HLA Class II Molecules with Peptides.
      Python
      •
      Apache License 2.0
      •2•9•0•0•Updated Jan 12, 2026Jan 12, 2026

    • bigwig-loader

      Public
      A fast dataloader for bigwig files made for machine learning
      Python
      •
      Apache License 2.0
      •2•29•0•0•Updated Dec 16, 2025Dec 16, 2025

    • symmetry-induced-score-matching

      Public
      Official implementation of the NeurIPS 25 Paper: "Diffusion Generative Modeling on Lie Group Representations"
      generative-modellie-groupsriemannian-geometry
      generative-modellie-groupsriemannian-geometryneural-dynamicsdiffusion-modelsscore-matchingflow-models
      Jupyter Notebook
      •
      Other
      •2•13•0•0•Updated Dec 12, 2025Dec 12, 2025

    • graphs-renderer

      Public
      A javascript library that provides rendering capabilities for CFD, scatterplot and Histogram graphs. It uses d3js for graph rendering.
      JavaScript
      •
      Apache License 2.0
      •2•4•0•5•Updated Dec 12, 2025Dec 12, 2025

    • llm-uncertainty

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Dec 11, 2025Dec 11, 2025

    • nf-crispr-pooled-screen

      Public
      CRISPR Pooled Screening Analysis
      Nextflow
      •
      Apache License 2.0
      •1•0•0•1•Updated Aug 13, 2025Aug 13, 2025

    • target-coverage-app

      Public
      Apache License 2.0
      •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • nf-ont-cagrepeat

      Public
      a repository for the nf-ont pipeline
      MIT License
      •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • CoSpred

      Public
      Mass Spectrometry Spectrum Prediction Workflow
      Python
      •
      Apache License 2.0
      •0•9•0•0•Updated Jun 22, 2025Jun 22, 2025

    • LISTT

      Public
      Lyme In Silico Typing Tool for Borrelia burgdorferi s.l.
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Jun 3, 2025Jun 3, 2025
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