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@etetoolkit ETE Toolkit

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    16 repositories

    • ete

      Public
      Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, …
      visualizationpythonphylogenetics
      visualizationpythonphylogeneticstree-structurephylogenomictreeview
      Python
      •
      GNU General Public License v3.0
      •232•884•244•14•Updated Jun 1, 2026Jun 1, 2026

    • etestore

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated May 6, 2026May 6, 2026

    • ete-gallery

      Public
      Examples of use of the ETE Toolkit
      Jupyter Notebook
      •0•3•0•0•Updated Mar 17, 2026Mar 17, 2026

    • ete-data

      Public
      Data files to use with the ETE Toolkit
      Python
      •
      GNU General Public License v3.0
      •1•0•0•1•Updated Dec 15, 2025Dec 15, 2025

    • ete4

      Public
      Python
      •
      GNU General Public License v3.0
      •0•2•1•0•Updated Feb 3, 2025Feb 3, 2025

    • ete4_apps

      Public
      command line applications based on ete4
      HTML
      •0•0•0•0•Updated Dec 7, 2021Dec 7, 2021

    • course

      Public
      Jupyter Notebook
      •9•13•0•0•Updated Sep 1, 2020Sep 1, 2020

    • webplugin

      Public
      Experiments for a new webplugin module (examples for phylotastic.org project )
      Python
      •4•4•1•1•Updated May 19, 2020May 19, 2020

    • pmodeltest

      Public
      Python implementation of modeltest/prottest supporting proteins and nucleotides (can be run in parallel).
      Python
      •4•6•2•0•Updated Feb 26, 2020Feb 26, 2020

    • logicali

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated May 28, 2018May 28, 2018

    • etetoolkit_GSoC

      Public
      0•0•0•0•Updated Jan 23, 2018Jan 23, 2018

    • ete_toolchain

      Public
      0•0•1•0•Updated Nov 3, 2017Nov 3, 2017

    • treematcher

      Public
      Search flexible patterns within tree structures using regular expression like syntax.
      Python
      •13•10•3•0•Updated Sep 22, 2017Sep 22, 2017

    • GSoC

      Public
      OBF Google Summer of Code
      22•0•0•0•Updated Feb 9, 2017Feb 9, 2017

    • ext_apps

      Public
      A compilation of external software used by ETE
      C
      •6•4•3•0•Updated May 13, 2016May 13, 2016

    • cookbook

      Public
      HTML
      •9•20•0•0•Updated Feb 13, 2016Feb 13, 2016
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