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@VirtualFlyBrain Virtual Fly Brain

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    126 repositories

    • VFB_reporting_results

      Public
      Repository containing the results of various data change and consistency checking.
      Python
      •
      Creative Commons Attribution 4.0 International
      •0•2•2•0•Updated Sep 15, 2026Sep 15, 2026

    • VFBquery

      Public
      A high-performance Python library providing optimized programmatic access to the VirtualFlyBrain knowledge graph, with faster queries through intelligent cachin…
      Python
      •
      Apache License 2.0
      •0•1•6•0•Updated Sep 14, 2026Sep 14, 2026

    • VFBchat

      Public
      VFBchat client
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Sep 11, 2026Sep 11, 2026

    • VFB3-MCP

      Public
      Explore Virtual Fly Brain data directly through your favourite LLM with the new VFB Model Context Protocol (MCP) tool
      mcpneuroscienceontology
      mcpneuroscienceontologyconnectomicsdrosophila-melanogastervirtualflybrainllmmcp-server
      TypeScript
      •
      MIT License
      •1•4•0•1•Updated Sep 10, 2026Sep 10, 2026

    • neurofly2026-workshop

      Public
      Online Workshop
      HTML
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Sep 10, 2026Sep 10, 2026

    • VFB2

      Public
      Virtual Fly Brain Documentation Site
      Python
      •
      MIT License
      •8•16•115•0•Updated Sep 10, 2026Sep 10, 2026

    • geppetto-vfb

      Public
      VFB (v2) application
      JavaScript
      •
      Other
      •3•10•66•2•Updated Sep 9, 2026Sep 9, 2026

    • ask-vfb

      Public
      Python
      •1•1•1•1•Updated Sep 7, 2026Sep 7, 2026

    • VFB_json_schema_indexer

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 5, 2026Sep 5, 2026

    • VFB_connect

      Public
      A library for querying VFB servers (neo4j, owlery, solr)
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•6•30•0•Updated Sep 5, 2026Sep 5, 2026

    • owlery-cache-reload

      Public
      Preload all VFB owlery queries
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 5, 2026Sep 5, 2026

    • Docker-VFB-Neo4j-ProductionDB

      Public
      Neo4j server loaded with the VFB Production DB
      Shell
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Sep 4, 2026Sep 4, 2026

    • uk.ac.vfb.geppetto

      Public
      Virtual Fly Brain geppetto code
      Java
      •
      Other
      •1•0•12•17•Updated Sep 3, 2026Sep 3, 2026

    • vfb-pipeline-polishing

      Public
      Final cypher steps after complete pipeline load
      Python
      •
      MIT License
      •0•0•3•0•Updated Sep 3, 2026Sep 3, 2026

    • VFB_connectomics_import

      Public
      A project to produce RDF/OWL representations of connectomics data for import to the VFB integration layer triple store.
      HTML
      •0•0•4•17•Updated Sep 3, 2026Sep 3, 2026

    • vfb-pipeline-collectdata

      Public
      Shell
      •
      Apache License 2.0
      •0•0•8•1•Updated Aug 31, 2026Aug 31, 2026

    • owl_cache

      Public
      a pre-caching and refresh sever to sit in front of owlery to speed up slow queries
      Shell
      •
      MIT License
      •0•0•0•0•Updated Aug 30, 2026Aug 30, 2026

    • Docker-CATMAID

      Public
      CATMAID server loaded with public EM data
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 28, 2026Aug 28, 2026

    • vfb-pipeline-dumps

      Public
      Pipeline that creates dumps from the triplestore for consumption by the downstream services
      Python
      •
      Apache License 2.0
      •0•0•14•3•Updated Aug 28, 2026Aug 28, 2026

    • vfb-scRNAseq-ontology

      Public
      An ontology of Drosophila melanogaster scRNAseq data pulled from FlyBase.
      Makefile
      •0•0•1•1•Updated Aug 27, 2026Aug 27, 2026

    • VFB

      Public
      Virtual Fly Brain
      HTML
      •
      GNU General Public License v2.0
      •5•17•48•0•Updated Aug 25, 2026Aug 25, 2026

    • .github

      Public
      Organisation profile and shared community health files for Virtual Fly Brain
      0•0•0•0•Updated Aug 25, 2026Aug 25, 2026

    • curation

      Public
      A repository of records specifying curation into the VFB Knowledge Base
      Python
      •
      Creative Commons Attribution 4.0 International
      •0•0•23•9•Updated Aug 25, 2026Aug 25, 2026

    • vfb-driver-ontology

      Public
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Aug 24, 2026Aug 24, 2026

    • vfb-extension-ontology

      Public
      A small application ontology used by VFB.
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •0•0•3•0•Updated Aug 18, 2026Aug 18, 2026

    • owlery-vfb

      Public
      Owlery server loaded with VFB.owl
      Shell
      •
      Apache License 2.0
      •4•0•1•0•Updated Aug 16, 2026Aug 16, 2026

    • DrosLarvalDomains

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•2•1•Updated Aug 16, 2026Aug 16, 2026

    • BrainTrap

      Public
      BrainTrap is a database of 3D protein expression patterns in the Drosophila brain, providing interactive visualization and exploration of confocal datasets show…
      CSS
      •
      GNU General Public License v2.0
      •1•0•0•1•Updated Aug 16, 2026Aug 16, 2026

    • DrosAdultVNSdomains

      Public
      Drosophila Adult Ventral Nervous System Domains
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•3•0•1•Updated Aug 16, 2026Aug 16, 2026

    • DrosAdultHalfBRAINdomains

      Public
      Domains from confocal serial section image data used for the study "A Systematic Nomenclature for the Insect Brain" Kei Ito, et al.
      Creative Commons Attribution 4.0 International
      •6•4•3•2•Updated Aug 16, 2026Aug 16, 2026
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