MoTrPAC repositories

32 repositories

motrpac-human-presuspension-acute
Public
R
•0•1•0•2•Updated Sep 25, 2026Sep 25, 2026
MotrpacHumanPreSuspensionAnalysis
Public
Motrpac Human Pre-Suspension Analysis Package
R
•
Other
•1•2•0•1•Updated Sep 24, 2026Sep 24, 2026
motrpac-frontend
Public
User interface and Frontend for MoTrPAC Bioinformatics Center
JavaScript
•
MIT License
•0•3•51•3•Updated Sep 23, 2026Sep 23, 2026
MotrpacBicQC
Public
R package for the MoTrPAC community
proteomics metabolomics r-package
proteomics metabolomics r-package qc motrpac
R
•
MIT License
•5•9•6•0•Updated Sep 23, 2026Sep 23, 2026
motrpac-human-presuspension-repro
Public
R
•
Other
•0•1•1•0•Updated Sep 23, 2026Sep 23, 2026
caper
Public
Cromwell/WDL wrapper for Python
Python
•
MIT License
•18•0•1•0•Updated Sep 8, 2026Sep 8, 2026
motrpac-atac-seq-pipeline
Public
MoTrPAC implementation of the ENCODE ATAC-seq pipeline
Python
•
MIT License
•1•4•0•0•Updated Aug 26, 2026Aug 26, 2026
motrpac-rna-seq-pipeline
Public
WDL implementation of harmonized RNA-seq pipeline for MoTrPAC project
Python
•
MIT License
•5•8•5•3•Updated Aug 26, 2026Aug 26, 2026
motrpac-rrbs-pipeline
Public
Pipeline for analysis of RRBS data, currently being based of MSSM pipeline
WDL
•
MIT License
•1•2•1•3•Updated Aug 26, 2026Aug 26, 2026
motrpac-proteomics-pipeline
Public
MoTrPAC cloud-based proteomics data analysis pipeline
Python
•
MIT License
•1•1•3•0•Updated Aug 26, 2026Aug 26, 2026
MotrpacRatTraining6moMuscleData
Public
R
•
Other
•0•1•0•0•Updated May 26, 2026May 26, 2026
motrpac-backend-utils
Public
Python package to unify utilities used by different backend services in the MoTrPAC Bioinformatics Center
python utilities google-cloud
python utilities google-cloud zipfile backend-service motrpac
Python
•
Other
•0•1•1•5•Updated Mar 28, 2026Mar 28, 2026
motrpac-cpet-ramp-protocol
Public
Code for MoTrPAC ramp protocol prediction paper
machine-learning prediction cardiopulmonary
machine-learning prediction cardiopulmonary
R
•0•0•0•0•Updated Feb 24, 2026Feb 24, 2026
MotrpacWorkshops
Public
Workshops about MoTrPAC data and tools
HTML
•
MIT License
•1•2•0•1•Updated Feb 12, 2026Feb 12, 2026
motrpac-rna-splicing-pipeline
Public
C++
•0•0•0•0•Updated Jan 27, 2026Jan 27, 2026
MotrpacRatTraining6moData
Public
Data for analysis of the MoTrPAC endurance exercise training study in 6-month-old rats
data r molecular-biology
data r molecular-biology multi-omics-data
R
•
MIT License
•1•16•0•0•Updated Aug 13, 2025Aug 13, 2025
.github
Public
0•0•0•0•Updated May 4, 2025May 4, 2025
MotrpacRatTraining6moQCRep
Public
Post-quantification analyses of multi-omic multi-tissue data from the MoTrPAC endurance exercise training study in young adult rats
HTML
•1•2•1•0•Updated Jan 10, 2025Jan 10, 2025
MotrpacRatTraining6mo
Public
Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats
r data-visualization data-analysis
r data-visualization data-analysis multi-omics
R
•
MIT License
•2•13•0•0•Updated Sep 30, 2024Sep 30, 2024
exercise-transcriptome-meta-analysis
Public
A React frontend (for those who are interested in the transcriptomic changes in response to endurance and resistance exercise or training in human blood or skel…
JavaScript
•0•0•6•0•Updated Sep 17, 2024Sep 17, 2024
MotrpacRatTraining6moWATData
Public
Data and analysis results for the MoTrPAC PASS1B rat white adipose tissue manuscript
data r exercise
data r exercise rat r-package adipose-tissue multi-omics rattus-norvegicus motrpac
R
•
Other
•0•1•0•0•Updated May 1, 2024May 1, 2024
MotrpacRatTrainingPhysiologyData
Public
Data and analysis results for the MoTrPAC PASS1B rat physiology manuscript
exercise rat physiology
exercise rat physiology motrpac
R
•
Other
•0•0•0•0•Updated May 1, 2024May 1, 2024
motrpac_public_data_analysis
Public
training gene moderators
training gene moderators exercise meta-analysis gene-data cohort-data
R
•2•7•0•0•Updated Apr 2, 2024Apr 2, 2024
MotrpacRatTraining6moWAT
Public
Helper Functions for the MotrpacRatTraining6moWATData R Package
r adipose-tissue motrpac
r adipose-tissue motrpac
R
•
Other
•0•2•1•0•Updated Mar 7, 2024Mar 7, 2024
motrpac-rat-training-mitochondria
Public
MoTrPAC rat training mitochondria companion.
HTML
•0•1•0•0•Updated Sep 27, 2023Sep 27, 2023
motrpac-proteomics-pnnl-prototype
Public
Testing implementation of PNNL pipeline on BIC infrastructure
R
•1•2•0•0•Updated Mar 29, 2023Mar 29, 2023
clinical-sample-batching
Public
Batching script for clinical samples
R
•3•1•3•0•Updated Dec 14, 2022Dec 14, 2022
motrpac-tools
Public
Scripts and Tools useful for MoTrPAC
Python
•
MIT License
•1•3•0•0•Updated Sep 15, 2022Sep 15, 2022
motrpac.github.io
Public
HTML
•0•1•0•0•Updated Jan 30, 2020Jan 30, 2020
motrpac_candidate_starter
Public
A starter react application for programming exercise.
JavaScript
•
MIT License
•6•1•0•0•Updated Feb 1, 2019Feb 1, 2019

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MoTrPAC

All

32 repositories

motrpac-human-presuspension-acute

MotrpacHumanPreSuspensionAnalysis

motrpac-frontend

MotrpacBicQC

motrpac-human-presuspension-repro

caper

motrpac-atac-seq-pipeline

motrpac-rna-seq-pipeline

motrpac-rrbs-pipeline

motrpac-proteomics-pipeline

MotrpacRatTraining6moMuscleData

motrpac-backend-utils

motrpac-cpet-ramp-protocol

MotrpacWorkshops

motrpac-rna-splicing-pipeline

MotrpacRatTraining6moData

.github

MotrpacRatTraining6moQCRep

MotrpacRatTraining6mo

exercise-transcriptome-meta-analysis

MotrpacRatTraining6moWATData

MotrpacRatTrainingPhysiologyData

motrpac_public_data_analysis

MotrpacRatTraining6moWAT

motrpac-rat-training-mitochondria

motrpac-proteomics-pnnl-prototype

clinical-sample-batching

motrpac-tools

motrpac.github.io

motrpac_candidate_starter

Repositories list

32 repositories