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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[2.2.2] - 2026-06-11

Added

  • Added hg38_noAlt handler (uses the same data as hg38)
  • GRD-1175

[2.2.1] - 2025-05-26

  • Re-deployment to enable labels for optional outputs
  • GRD-948

[2.2.0] - 2024-06-25

Added

  • GRD-797 - Add vidarr labels to outputs (changes to medata only).

[2.1.7] - 2023-09-14

Changed

  • Removing mm9, updating mm10, and making ploidy file optional.

[2.1.6m] - 2023-05-30

Changed

  • Use rstasts instead of now not supported rstats-cairo

[2.1.6] - 2023-05-30

Fixed

  • Optmizing issues specified in GRD-544.

[Unreleased] - 2021-11-10

Fixed

  • GP-2887 Making RT tests more robust.

[1.0.0] - 2021-06-02

Changed

  • Added alternative name for sequenza

[2.1.5m] - 2021-01-08

Added

  • Added genome size and reference parameters, ploidy file is optional. Modules used by default are R 4.0 - compliant, to enable support for newer assemblies (hg38, mm11).

[2.1.5] - 2020-10-15

Added

  • Added an ability to produce .png for the contour and genome plots showing the effect of gamma value, along with a summary plot and a rmarkdown .pdf with all new plots together.

[2.1.2] - 2020-06-26

Added

  • Added window, gamma, female and cancerType parameters for sequenza. Fixed an issue in R script, made more robust when dealing with challenging data.

[1.0] - 2020-03-13

Added

  • Initial Release.