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NAMESPACE
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81 lines (80 loc) · 2.15 KB
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# Generated by roxygen2: do not edit by hand
export(RunscMC)
export(StackedVlnPlot)
export(computeProportion)
export(dimPlot)
export(doHeatmap)
export(dotPlot)
export(featurePlot)
export(getEnrichedGO)
export(ggPalette)
export(identifyClusters)
export(identifyClusters_internal)
export(identifyConfidentCells)
export(identifyDEG)
export(identifyIntegrationFeatures)
export(identifyMarkers)
export(identifyNeighbors)
export(integrateData)
export(learnTechnicalVariation)
export(scMC_theme_opts)
export(scPalette)
export(vlnPlot)
import(Seurat)
import(clusterProfiler)
import(dplyr)
import(ggplot2)
import(rlang)
importFrom(Matrix,Matrix)
importFrom(RColorBrewer,brewer.pal)
importFrom(RSpectra,eigs_sym)
importFrom(Seurat,DimPlot)
importFrom(Seurat,DotPlot)
importFrom(Seurat,FeaturePlot)
importFrom(Seurat,FindClusters)
importFrom(Seurat,FindNeighbors)
importFrom(Seurat,Idents)
importFrom(Seurat,RunPCA)
importFrom(Seurat,VlnPlot)
importFrom(future,nbrOfWorkers)
importFrom(future,plan)
importFrom(future.apply,future_sapply)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,annotation_raster)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_raster)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplot_build)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggpubr,stat_compare_means)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,hcl)
importFrom(grid,gpar)
importFrom(grid,textGrob)
importFrom(irlba,irlba)
importFrom(patchwork,wrap_plots)
importFrom(pbapply,pbsapply)
importFrom(plyr,as.quoted)
importFrom(plyr,ddply)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map_dbl)
importFrom(scales,hue_pal)
importFrom(stats,as.dist)
importFrom(stats,cutree)
importFrom(stats,hclust)
importFrom(stats,median)
importFrom(stats,quantile)