Move keys creation to cube preprocessing

[SanderDevisscher]

Currently keys.csv is created by ./src/upload_processing_to_UAT.R

aspbo/src/upload_processing_to_UAT.R

Line 66 in 3242de8

createKeyData(dataDir = processingFilePath, bucket = bucket)

While this creates a window¹ in which the cube was updated and but the keys.csv file is not, in which issues can occur caused by mismatches between the cube and the keys - file. This might be related to inbo/alien-species-portal#192.

Both the cube and the timeseries are uploaded directly in the script, see:

aspbo/src/cube_preprocessing.Rmd

Line 193 in 3242de8

alienSpecies::createTabularData(dataDir = cube_path, type = "occurrence", bucket = UAT_bucket)

&

aspbo/src/cube_preprocessing.Rmd

Lines 1037 to 1041 in 3242de8

	aws.s3::s3save(df_ts,
	object = "df_timeseries.Rdata",
	bucket = UAT_bucket,
	opts = list(show_progress = TRUE,
	multipart = TRUE))

&

aspbo/src/cube_preprocessing.Rmd

Lines 1049 to 1053 in 3242de8

	alienSpecies::createTimeseries(
	# read grid.RData from bucket
	shapeData = alienSpecies::loadShapeData("grid.RData")$utm1_bel_with_regions,
	bucket = UAT_bucket
	)

¹time to approved the PR + approx. 1h 10m to run upload_files_processing