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aedes v0.3

  • New aedes_add_neurons() for upserting rows in the FlyTable aedes_main table. Pins a single materialisation timestamp on both the supplied ids and a fresh aedes_meta(expiry=0) read so the join-by-root_id is reliable, and computes point_xyz for new rows via aedes_key_point(). Avoids the heavy aedes_flytable_update() pass. (#8)
  • New aedes_key_point() returns a "good" annotation point on a neuron: the principal branch point of its L2 skeleton, with the neuron optionally rerooted onto its furthest endpoint first. (#8) The dataset- agnostic machinery now lives in fafbseg as flywire_key_point() / key_point_from_neuron() (requires fafbseg (>= 0.15.15)); aedes_key_point() is a thin with_aedes() wrapper around it.
  • aedes_sequential_update() gains version and timestamp arguments so callers can pin all downstream service calls (aedes_xyz2id(), fafbseg::flywire_updateids()) to the same materialisation. Defaults to timestamp = 'now' when neither is supplied. (#8)
  • read_aedes_neurons() wraps fafbseg::read_l2skel() and reroots each neuron via a per-neuron cascade: FlyTable soma_xyz → flywire_nuclei() → the packaged neuropil mesh (signed-distance fallback). Provenance recorded in a soma_source column. (#6)
  • New aedes_soma_position() returns one-row-per-id soma positions, matching strictly by root_id; private helper silently collapses bookkeeping duplicates in the nucleus table and warns only when a root_id has genuinely distinct nuclei. (#6)
  • New aedes_neuropil_mesh dataset: mesh3d of the Aedes brain neuropil (nm coordinates), shipped via LazyData. (#6)
  • New aedes_mirror() and related transforms for mirroring points and objects through the Aedes brain. (#5)
  • aedes_chunkedgraph_edits() fixes data-frame assembly for chunked responses that include empty batches or missing names, and adds incremental on-disk caching for operation fetches (Arrow plus a missing-op sidecar). (#4)
  • aedes_sequential_update() no longer loses work when individual supervoxel lookups fail. (#3)

aedes v0.2

  • Fast supervoxel lookups via the MRC LMB transform service (aedes_xyz2id() with method="auto"), > 100x faster than cloudvolume for bulk queries.
  • also features chunked requests with progress reporting and automatic retry at reduced chunk size on failure.
  • aedes_sequential_update() now uses the fast transform service for supervoxel lookups.
  • aedes_meta() now wraps fafbseg::cam_meta() for metadata queries, with improved documentation of version/timestamp handling.
  • Refactored aedes_cfmeta() column renaming for robustness.
  • Package hygiene: removed unused imports, added glue, httr, nat.utils, pbapply to Imports, pinned fafbseg (>= 0.15.5).

aedes v0.1