Merge branch 'topic/default/coverage' into 'branch/default'

paugier · paugier · commit b7810da191cb · 2025-10-21T14:19:37.000Z
Improve and investigate coverage

See merge request fluiddyn/fluidimage!127
diff --git a/.github/workflows/ci-linux.yml b/.github/workflows/ci-linux.yml
@@ -33,6 +33,7 @@ jobs:
 
     - name: Test with nox
       run: |
+        export TRANSONIC_NO_REPLACE=1
         nox -s "test(cov=True, with_opencv=True)"
 
     - name: Upload coverage to codecov
diff --git a/MANIFEST.in b/MANIFEST.in
@@ -8,5 +8,5 @@ prune .github
 prune try
 prune image_samples
 prune requirements
-prune fluidimage/calcul/plot_evaluate_subpix
+prune dev
 prune **/__pythran__
diff --git a/Makefile b/Makefile
@@ -28,3 +28,10 @@ format:
 
 test:
 	OMP_NUM_THREADS=1 pdm run pytest src
+
+cov:
+	# much slower with TRANSONIC_NO_REPLACE but more accurate
+	TRANSONIC_NO_REPLACE=1 OMP_NUM_THREADS=1 pytest --pyargs fluidimage --cov --no-cov-on-fail
+
+cov-html:
+	coverage html
diff --git a/dev/evaluate_subpix.py b/dev/evaluate_subpix.py
diff --git a/pyproject.toml b/pyproject.toml
@@ -157,6 +157,7 @@ omit = [
     "**/__pythran__/*.py",
     "**/__python__/*.py",
     "**/__numba__/*.py",
+    "src/fluidimage/postproc/postproc.py",
 ]
 [tool.coverage.report]
 show_missing = true
diff --git a/src/fluidimage/calcul/meson.build b/src/fluidimage/calcul/meson.build
@@ -1,7 +1,6 @@
 
 python_sources = [
   '__init__.py',
-  '_evaluate_subpix.py',
   'correl.py',
   'correl_pycuda.py',
   'errors.py',

Original file line number	Diff line number	Diff line change
`@@ -157,6 +157,7 @@ omit = [`
`157`	`157`	`"*/__pythran__/.py",`
`158`	`158`	`"*/__python__/.py",`
`159`	`159`	`"*/__numba__/.py",`
	`160`	`+ "src/fluidimage/postproc/postproc.py",`
`160`	`161`	`]`
`161`	`162`	`[tool.coverage.report]`
`162`	`163`	`show_missing = true`