update

Noah · Noah · commit 550adb7b4dc1 · 2025-09-17T12:08:12.000-04:00
diff --git a/wdl_tasks/trim_galore.wdl b/wdl_tasks/trim_galore.wdl
@@ -48,7 +48,7 @@ task fastqc_trim {
 		File? out_fqc  = "${sampleName}_trimmed.fq.gz"
     		File? out_fqc1 = "${sampleName}_val_1.fq.gz"
     		File? out_fqc2 = "${sampleName}_val_2.fq.gz"
-    		File out_html  = "${sampleName}_trimmed_fastqc.html"
+    		File? out_html  = "${sampleName}_trimmed_fastqc.html"
 	}
 	runtime {
 		docker: "${Dockerhub_Pull}"

Original file line number	Diff line number	Diff line change
`@@ -48,7 +48,7 @@ task fastqc_trim {`
`48`	`48`	`File? out_fqc = "${sampleName}_trimmed.fq.gz"`
`49`	`49`	`File? out_fqc1 = "${sampleName}_val_1.fq.gz"`
`50`	`50`	`File? out_fqc2 = "${sampleName}_val_2.fq.gz"`
`51`		`- File out_html = "${sampleName}_trimmed_fastqc.html"`
	`51`	`+ File? out_html = "${sampleName}_trimmed_fastqc.html"`
`52`	`52`	`}`
`53`	`53`	`runtime {`
`54`	`54`	`docker: "${Dockerhub_Pull}"`