Add source-agnostic tokenized dataset with bedbase source #2

	name: Run pytests for dev

	on:
	pull_request:
	branches: [dev]

	jobs:

	pytest:
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	python-version: ["3.13"]
	os: [ubuntu-latest]

	steps:
	- uses: actions/checkout@v3

	- name: Hack setup-python cache

	if: hashFiles('/requirements.txt', '/pyproject.toml') == ''
	run: \|
	touch ./requirements.txt

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	cache: 'pip' # caching can speed up the workflow by reusing the installed dependencies

	- name: Install uv
	run: pip install uv

	- name: Install test dependencies
	run: if [ -f requirements/requirements-test.txt ]; then uv pip install -r requirements/requirements-test.txt --system; fi

	- name: Install package
	run: uv pip install .[ml] --system

	- name: Run pytest tests
	run: pytest tests -x -vv --remote-data

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