Hello,
I tested all four modules with the example data, however, only module 1 and 3 finished successfully.
I got the same error as issue #4 in module 2.
As for module 4, despite the log suggested a successful run...

Nothing was created in my output directory. No "neoantigen_prediction" subdirectory, no neoantigen prediction result, there was nothing.

Can anyone help? Thx!