FEATURE REQUEST: support for varscan txt output

[die4live]

As in varscan's default txt output, there are more stats info including filtering for high confident variants, that would be helpful for mucor to support this input format like it supports mutect's txt output. Thanks!

[jblachly]

Thanks, we will certainly try to write a quick input module for this.

[jblachly]

@die4live Can you upload some examples somewhere so we can make sure this is working?

[die4live]

@jblachly Sure, for VarScan v2.4,
germline.snp.filter.txt
somatic.snv.filter.txt