berkeleybop.github.io/_data/sidebar_doc.yml at 4e59d8339e2df3b77b880381bd4e49d6d8bb3825 · berkeleybop/berkeleybop.github.io · GitHub

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# This is your sidebar TOC. The sidebar code loops through sections here and provides the appropriate formatting.

# Sidebar
entries:
- title: Sidebar
  subcategories:

    - title: About
      print: true
      items:
        - title: Welcome
          url: "/index.html"
        - title: Publications
          url: /publications_selected
        - title: Job openings
          url: /jobs
        - title: Best practices
          url: /best_practice
        - title: Contact
          url: /team_contact

    - title: Projects
      print: true
      items:
        - title: AI/ML projects
          url: /project/AI

        - title: BERIL
          url: /project/BERIL

        - title: Gene Ontology
          url: /project/gene-ontology

        - title: Monarch Initiative
          url: /project/monarch

        - title: Phenomics First
          url: /project/phenomics-first

        - title: "NCATS Biomedical Data Translator"
          url: /project/ncats-translator

        - title: "Alliance for Genome Resources"
          url: /project/agr

        - title: BioPortal
          url: /project/bioportal

        - title: "National Microbiome Data Collaborative (NMDC)"
          url: /project/nmdc

        - title: Bridge2AI
          url: /project/Bridge2AI

        - title: NIEHS Data Standards
          url: /project/niehs-data-standards

        - title: Exomiser
          url: /project/exomiser

        - title: OBO Foundry
          url: /project/obo-foundry

        - title: GMOD (inactive)
          url: /project/gmod

        - title: KG-COVID-19 (inactive)
          url: /project/kg-covid-19

        - title: IDG2KG (inactive)
          url: /project/idg2kg

        - title: CCDH (inactive)
          url: /project/ccdh

        - title: "INCA: Intelligent Concept Assistant (inactive)"
          url: /project/inca

    - title: Software
      print: true
      items:
        - title: OntoGPT
          url: /project/GPT

        - title: AmiGO and GOlr
          url: /software/amigo

        - title: Noctua
          url: /software/noctua

        - title: Biolink Model
          url: /software/biolink-model

        - title: Biolink API
          url: /software/biolink-api

        - title: LinkML
          url: /software/biolinkml

        - title: OAK
          url: /software/OAK

        - title: OwlSim
          url: /software/owlsim

        - title: ROBOT
          url: /software/robot

        - title: SSSOM
          url: /software/sssom

        - title: OWLTools
          url: /software/owltools

        - title: Ontology Development Kit (ODK)
          url: /software/odk

        - title: k-BOOM
          url: /software/kboom

        - title: BioMake
          url: /software/biomake

        - title: PAINT
          url: /software/paint

        - title: NEAT
          url: /software/NEAT

        - title: SymbiOnt
          url: /software/symbiont

    - title: Ontologies
      print: true
      items:

        - title: Gene Ontology
          url: /project/gene-ontology

        - title: Environment Ontology
          url: /ontology/envo

        - title: Uberon
          url: /ontology/uberon

        - title: FANTOM5 Ontology
          url: /ontology/fantom-ontology

        - title: Mondo disease ontology
          url: /ontology/mondo

        - title: Phenotype ontologies
          url: /ontology/upheno

        - title: Relation Ontology
          url: /ontology/ro

    - title: People
      items:
        - title: Chris Mungall (PI)
          url: /people/chris-mungall/
        - title: Seth Carbon
          url: /people/seth-carbon
        - title: Harry Caufield
          url: /people/harry-caufield
        - title: Nomi Harris
          url: /people/nomi-harris
        - title: Marcin Joachimiak
          url: /people/marcin-joachimiak
        - title: Patrick Kalita
          url: /people/patrick-kalita
        - title: Mark Miller
          url: /people/mark-a-miller
        - title: Sierra Moxon
          url: /people/sierra-moxon
        - title: Sujay Patil
          url: /people/sujay-patil
        - title: Justin Reese
          url: /people/justin-reese
        - title: Suzanna Lewis (emerita)
          url: /people/suzanna-lewis
        - title: Recent BBOP alumni
          url: /people/alumni