[BUG] load_ogbn_mag 报错

[ilovecomet]

Describe the bug
加载图的时候报错

To Reproduce
Steps to reproduce the behavior:
code如下：
import graphscope
graphscope.set_option(show_log=False)
from graphscope.dataset import load_ogbn_mag
g = load_ogbn_mag()

Expected behavior
A clear and concise description of what you expected to happen.
Loading edge labeled affiliated: 0%| | 0/10 [00:00<?, ?it/s]
Loading edge labeled affiliated: 100%|██████████| 10/10 [00:00<00:00, 136.56it/s]
*** Aborted at 1675753334 (unix time) try "date -d @1675753334" if you are using GNU date ***
PC: @ 0x0 (unknown)
*** SIGBUS (@0x7f912bf8dff0) received by PID 33686 (TID 0x7f9ac7fff700) from PID 737730544; stack trace: ***
@ 0x7f9ad18af980 (unknown)
@ 0x7f9acf31aa9b (unknown)
@ 0x7f9af3765b38 vineyard::generate_directed_csc<>()
@ 0x7f9af35a7c90 vineyard::ArrowFragment<>::AddNewEdgeLabels()
@ 0x7f9af35ab85f vineyard::ArrowFragment<>::AddEdges()
@ 0x7f9af39011b7 vineyard::BasicEVFragmentLoader<>::AddEdgesToFragment()
@ 0x7f9af3901d9f vineyard::BasicEVFragmentLoader<>::AddVerticesAndEdgesToFragment()
@ 0x7f9af37fb0aa vineyard::ArrowFragmentLoader<>::addVerticesAndEdges()
@ 0x7f9acc6540c2 gs::ArrowFragmentLoader<>::AddLabelsToFragment()
@ 0x7f9acc654197 gs::ArrowFragmentLoader<>::AddLabelsToFragmentAsFragmentGroup()
@ 0x7f9acc5bfc4e AddLabelsToGraph
@ 0x479797 gs::GrapeInstance::addLabelsToGraph()
@ 0x489562 gs::GrapeInstance::OnReceive()
@ 0x508950 gs::Dispatcher::processCmd()
@ 0x50ab66 gs::Dispatcher::publisherLoop()
@ 0x7f9af3b4a4f0 (unknown)
@ 0x7f9ad18a46db start_thread
@ 0x7f9acf2cf61f clone
Traceback (most recent call last):
File "/usr/local/lib/python3.8/dist-packages/graphscope/client/utils.py", line 156, in with_grpc_catch
return fn(*args, **kwargs)
File "/usr/local/lib/python3.8/dist-packages/graphscope/client/rpc.py", line 184, in _run_step_impl
response = self._grpc_utils.parse_runstep_responses(
File "/usr/local/lib/python3.8/dist-packages/graphscope/client/utils.py", line 122, in parse_runstep_responses
for response in responses:
File "/usr/local/lib/python3.8/dist-packages/grpc/_channel.py", line 426, in next
return self._next()
File "/usr/local/lib/python3.8/dist-packages/grpc/_channel.py", line 826, in _next
raise self
grpc._channel._MultiThreadedRendezvous: <_MultiThreadedRendezvous of RPC that terminated with:
status = StatusCode.UNAVAILABLE
details = "Socket closed"
debug_error_string = "{"created":"@1675753346.968258046","description":"Error received from peer ipv4:127.0.0.1:59998","file":"src/core/lib/surface/call.cc","file_line":1074,"grpc_message":"Socket closed","grpc_status":14}"

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/root/demo/code/demo.py", line 10, in
g = load_ogbn_mag()
File "/usr/local/lib/python3.8/dist-packages/graphscope/dataset/ogbn_mag.py", line 79, in load_ogbn_mag
graph.add_vertices(os.path.join(prefix, "paper.csv"), "paper")
File "/usr/local/lib/python3.8/dist-packages/graphscope/framework/graph.py", line 1113, in add_edges
return self._session._wrapper(
File "/usr/local/lib/python3.8/dist-packages/graphscope/client/session.py", line 941, in _wrapper
return self.run(dag_node)
File "/usr/local/lib/python3.8/dist-packages/graphscope/client/session.py", line 977, in run
return self.run_fetches(fetches)
File "/usr/local/lib/python3.8/dist-packages/graphscope/client/session.py", line 987, in run_fetches
response = self._grpc_client.run(fetch_handler.targets)
File "/usr/local/lib/python3.8/dist-packages/graphscope/client/rpc.py", line 98, in run
return self._run_step_impl(dag_def)
File "/usr/local/lib/python3.8/dist-packages/graphscope/client/utils.py", line 161, in with_grpc_catch
raise GRPCError(
graphscope.framework.errors.GRPCError: RPC failed: rpc _run_step_impl failed: status <_MultiThreadedRendezvous of RPC that terminated with:
status = StatusCode.UNAVAILABLE
details = "Socket closed"
debug_error_string = "{"created":"@1675753346.968258046","description":"Error received from peer ipv4:127.0.0.1:59998","file":"src/core/lib/surface/call.cc","file_line":1074,"grpc_message":"Socket closed","grpc_status":14}"

2023-02-07 15:02:31,504 [INFO][coordinator:519]: Clean up resources, cleanup_instance: True, is_dangling: False
2023-02-07 15:02:31,506 [ERROR][coordinator:545]: Cleanup failed, code: UNAVAILABLE, details: failed to connect to all addresses
2023-02-07 15:02:31,506 [ERROR][coordinator:545]: Cleanup failed, code: UNAVAILABLE, details: failed to connect to all addresses
2023-02-07 15:02:31,509 [ERROR][coordinator:545]: Cleanup failed, code: UNAVAILABLE, details: failed to connect to all addresses
2023-02-07 15:02:31,509 [ERROR][coordinator:545]: Cleanup failed, code: UNAVAILABLE, details: failed to connect to all addresses
2023-02-07 15:02:31,515 [INFO][coordinator:519]: Clean up resources, cleanup_instance: True, is_dangling: False
2023-02-07 15:02:31,516 [INFO][coordinator:519]: Clean up resources, cleanup_instance: True, is_dangling: False
Screenshots
If applicable, add screenshots to help explain your problem.

Environment (please complete the following information):

• GraphScope version: 0.19.0
• OS: Linux ubuntu
• Version 18.04
• Kubernetes Version ：单机版(pip安装)

Additional context
Add any other context about the problem here.

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[sighingnow]

Hi @ilovecomet, please add --shm-size=8g when docker run if you are working inside docker.

[ilovecomet]

It's ok, thanks.