FL4Health/.pre-commit-config.yaml at main · VectorInstitute/FL4Health · GitHub

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repos:
  - repo: https://github.com/astral-sh/uv-pre-commit
    rev: 0.10.12
    hooks:
      - id: uv-lock

  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v6.0.0  # Use the ref you want to point at
    hooks:
      - id: trailing-whitespace
      - id: check-ast
      - id: check-builtin-literals
      - id: check-docstring-first
      - id: check-executables-have-shebangs
      - id: debug-statements
      - id: end-of-file-fixer
      - id: mixed-line-ending
        args: [--fix=lf]
      - id: fix-byte-order-marker
      - id: check-merge-conflict
      - id: check-symlinks
      - id: detect-private-key
      - id: trailing-whitespace
      - id: check-yaml
        args: [--unsafe]
      - id: check-toml

  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: 'v0.15.7'
    hooks:
    - id: ruff-check
      args: [--fix, --exit-non-zero-on-fix]
      types_or: [python, jupyter]
    - id: ruff-format
      types_or: [python, jupyter]

  - repo: https://github.com/pre-commit/mirrors-mypy
    rev: v1.19.1
    hooks:
      - id: mypy
        name: mypy
        entry: ./run_mypy.sh
        language: system

  - repo: https://github.com/nbQA-dev/nbQA
    rev: 1.9.1
    hooks:
      - id: nbqa-check-ast
      - id: nbqa-mypy
        args: ["--ignore-missing-imports"]

  - repo: local
    hooks:
      - id: mypy legacy type check
        name: mypy legacy type check
        entry: python mypy_disallow_legacy_types.py
        language: python
        pass_filenames: true

ci:
    autofix_commit_msg: |
        [pre-commit.ci] Add auto fixes from pre-commit.com hooks

        for more information, see https://pre-commit.ci
    autofix_prs: true
    autoupdate_branch: ''
    autoupdate_commit_msg: '[pre-commit.ci] pre-commit autoupdate'
    autoupdate_schedule: weekly
    skip: [mypy]
    submodules: false