SeqTrainer/pyproject.toml at main · SynBioDex/SeqTrainer · GitHub

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[build-system]
requires = ["setuptools>=61.0"]
build-backend = "setuptools.build_meta"

[project]
name = "seqtrainer"
version = "0.0.1"
description = "SeqTrainer: Encoding Synthetic Biology Data for Machine Learning"
readme = "README.md"
requires-python = ">=3.8,<=3.9.9"
license = {file = "LICENSE"}
keywords = ["seqtrainer", "sbol", "machine learning", "preprocessing", "synthetic biology"]
authors = [
  {name="Gonzalo Vidal", email="[email protected]"},
  {name="Sai Wong", email="[email protected]" }
]
maintainers = [
  {name="Gonzalo Vidal", email="[email protected]"}

]
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
]

dependencies = [
    "sbol2",
    "matplotlib",
    "rdflib==6.3.2",
    "pandas==1.3.5",
    "numpy==1.23.5",
    "configparser==6.0.0",
    "scikit-learn==1.3.0",
    "transformers==4.30.2",
    "tqdm==4.65.0",
]

[project.optional-dependencies]
gnn = [
    "torch==1.13.0+cpu",
    "torch-geometric==2.4.0",
]

[project.urls]
"Homepage" = "https://github.com/SynBioDex/SeqTrainer"
"Bug Tracker" = "https://github.com/SynBioDex/SeqTrainer/issues"