DESCRIPTION

Package: TxDbLite
Type: Package
Date: 2016-08-16
Title: Lightweight SQLite-based annotation classes/packages for use with arkas
Version: 1.9.113
Author: Tim Triche, Jr., Anthony Colombo
Maintainer: Tim Triche, Jr. <tim.triche@gmail.com>
Description: Package to make (very) lightweight annotation packages from FASTAs.  The annotations here give transcript biotype and gene biotype for genes, non coding regions and repetitive elements.  It is determined for light annotations without gene-transfer format coordinate information.
Depends:
    DBI,
    RSQLite,  
    ensembldb,
    R(>= 2.10.0)
Imports:
    Biostrings,
    GenomicRanges,
    OrganismDbi,
    Rsamtools,
    biomaRt,
    Biobase,
    GenomeInfoDb,
    methods,
    IRanges,
    S4Vectors,
    BiocGenerics
Suggests:
    BiocStyle,
    arkas,
    ComplexHeatmap,
    rtracklayer,
    knitr,
    stringdist
VignetteBuilder: knitr
License: LGPL
RoxygenNote: 5.0.1