oir_flatmount_segmentation - Hartnett Lab - A MONAI bundle for automated rat and mouse oxygen-induced retinopathy flatmount segmentation (total retina/avascular area/intravitreal neovascularization) #3303
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| name: code-format-check | |
| on: | |
| # code format check for pull requests and the dev branch | |
| push: | |
| branches: | |
| - dev | |
| pull_request: | |
| concurrency: | |
| # automatically cancel the previously triggered workflows when there's a newer version | |
| group: build-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| flake8-py3: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: '3.10' | |
| cache: 'pip' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip wheel wheel-stub | |
| python -m pip install --upgrade setuptools | |
| python -m pip install -r requirements-dev.txt | |
| - name: type check | |
| run: | | |
| # clean up temporary files | |
| $(pwd)/runtests.sh --clean | |
| # Git hub actions have 2 cores, so parallelize pytype | |
| $(pwd)/runtests.sh --codeformat -j 2 |