SPECFEMPP/Dockerfile at main · PrincetonUniversity/SPECFEMPP · GitHub

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# Dockerfile to build serial version

FROM gcc:9.5.0


# Install vim editor
RUN apt-get update && apt-get install -y vim wget build-essential git

# Install Emacs
RUN apt-get update && apt-get install -y emacs

#Install snakemake
RUN apt-get update && apt-get install -y python3-pip && pip3 install snakemake

# Build and Install CMake
RUN echo "Installing CMake..." && \
    echo "====================" && \
    echo "" && \
    apt-get update && \
    apt purge cmake && \
    version=3.26 && \
    build=5 && \
    ## don't modify from here
    mkdir ~/temp && \
    cd ~/temp && \
    wget https://cmake.org/files/v$version/cmake-$version.$build.tar.gz && \
    tar -xzvf cmake-$version.$build.tar.gz && \
    cd cmake-$version.$build/ && \
    ./bootstrap --parallel=$(nproc) && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    rm -rf ~/temp && \
    echo "Done."

RUN echo "cmake version:" && \
    cmake --version && \
    echo "Done."

# Install HDF5
RUN echo "Installing HDF5..." && \
    echo "==================" && \
    echo "" && \
    apt-get update && \
    apt-get install -y \
        libhdf5-dev \
        libhdf5-serial-dev \
        hdf5-tools \
        pkg-config \
        zlib1g-dev && \
    echo "Done."

# Set HDF5 environment variables for CMake discovery
ENV HDF5_ROOT=/usr
ENV HDF5_DIR=/usr/lib/x86_64-linux-gnu/hdf5/serial
ENV PKG_CONFIG_PATH=/usr/lib/x86_64-linux-gnu/pkgconfig

# Verify HDF5 installation
RUN echo "HDF5 version:" && \
    h5dump --version && \
    echo "HDF5 libraries location:" && \
    find /usr -name "libhdf5*" -type f 2>/dev/null | head -10 && \
    echo "Done."

# Set up WORKDIR
WORKDIR /usr/local/specfempp

ENV SOURCE=/usr/local/specfempp/source
ENV BUILD=/usr/local/specfempp/source/build

COPY . ${SOURCE}
# Install SPECFEM++
RUN echo "Installing SPECFEM++..." && \
    echo "========================" && \
    echo "" && \
    cd ${SOURCE} && \
    rm -rf ${BUILD} && \
    cmake --preset release-nosimd -DSPECFEM_ENABLE_HDF5=ON -DSPECFEM_ENABLE_VTK=OFF && \
    cmake --build --preset release-nosimd && \
    echo "Done."

# Set environment variables
ENV PATH="${SOURCE}/bin/release-nosimd:${PATH}"

CMD ["/bin/bash"]