main.yml

name: CI

on:
  push:
    paths-ignore:
      - 'docs/**'
    branches: [ master ]
    tags:
      - '*'
  pull_request:
    paths-ignore:
      - 'docs/**'
    branches: [ master ]
  schedule:
    - cron: '0 0 * * 0,3'
  workflow_dispatch:

concurrency:
  group: ${{ github.ref }}-ci
  cancel-in-progress: ${{ github.event_name == 'pull_request' }}

env:
  GEANT4_VERSION: 'v11.4.2'
  ITK_VERSION: 'v5.4.4'

jobs:
  build_opengate_wheel:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-24.04]
        python-version: ['3.10']
    steps:
    - name: Checkout github repo
      uses: actions/checkout@v6
    - name: Checkout submodules
      shell: bash -l {0}
      run: |
        export GIT_SSL_NO_VERIFY=1
        git submodule update --init --recursive
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v6
      with:
        python-version: ${{ matrix.python-version }}
        architecture: 'x64'
    - name: Create opengate Wheel
      run: |
          rm -rf $GITHUB_WORKSPACE/opengate/tests/data
          cp $GITHUB_WORKSPACE/.git/modules/gam-tests/data/HEAD $GITHUB_WORKSPACE/opengate/tests/
          pip install build
          python -m build
    - name: Upload wheels
      uses: actions/upload-artifact@v7
      with:
        name: dist-opengate
        path: dist/

  build_opengate_core_wheel_pr:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-24.04, macos-15, windows-2025]
        python-version: ['3.10', '3.11', '3.12', '3.13', '3.14']
        exclude:
          - os: macos-15
            python-version: '3.10'
          - os: windows-2025
            python-version: '3.10'
    steps:
    - name: Checkout github repo
      uses: actions/checkout@v6
    - name: Checkout submodules
      shell: bash -l {0}
      run: |
        if [[ ${{ matrix.os }} == "windows-2025" ]]; then
          set "GIT_SSL_NO_VERIFY=1"
        else
          export GIT_SSL_NO_VERIFY=1
        fi
        git submodule update --init --recursive
    - uses: ./.github/workflows/actions_build
      with:
        os: ${{ matrix.os }}
        python-version: ${{ matrix.python-version }}
    - name: Upload wheels
      uses: actions/upload-artifact@v7
      with:
        name: dist-${{ matrix.os }}-${{ matrix.python-version }}-opengate-core
        path: dist/

  build_opengate_core_wheel_ci_or_tag:
    if: (github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/')) || (github.event_name == 'schedule')
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-24.04-arm, macos-15-intel]
        python-version: ['3.10', '3.11', '3.12', '3.13', '3.14']
        exclude:
          - os: macos-15
            python-version: '3.10'
          - os: windows-2025
            python-version: '3.10'
          - os: macos-15-intel
            python-version: '3.14'
    steps:
    - name: Checkout github repo
      uses: actions/checkout@v6
    - name: Checkout submodules
      shell: bash -l {0}
      run: |
        if [[ ${{ matrix.os }} == "windows-11-arm" ]]; then
          set "GIT_SSL_NO_VERIFY=1"
        else
          export GIT_SSL_NO_VERIFY=1
        fi
        git submodule update --init --recursive
    - uses: ./.github/workflows/actions_build
      with:
        os: ${{ matrix.os }}
        python-version: ${{ matrix.python-version }}
    - name: Upload wheels
      uses: actions/upload-artifact@v7
      with:
        name: dist-${{ matrix.os }}-${{ matrix.python-version }}-opengate-core-ci_or_tag
        path: dist/

  build_opengate_core_novis_wheel:
    if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/')
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-24.04]
        python-version: ['3.10', '3.11', '3.12', '3.13', '3.14']
    steps:
    - name: Checkout github repo
      uses: actions/checkout@v6
    - name: Checkout submodules
      shell: bash -l {0}
      run: |
        export GIT_SSL_NO_VERIFY=1
        git submodule update --init --recursive
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v6
      with:
        python-version: ${{ matrix.python-version }}
        architecture: 'x64'
    - name: Get OS version
      id: get-os-version
      shell: bash -l {0}
      run: |
        varOS=`cat /etc/os-release | grep "VERSION=" | grep -oP '(?<=\").*?(?=\")'`
        varOS=($varOS)
        varOS=${varOS[0]}
        varOS="${varOS}-intel"
        echo "release=${varOS}" >> $GITHUB_OUTPUT
    - name: Cache modules
      id: cache_opengate_core_dependencies
      uses: actions/cache@v4
      with:
        path: ~/software
        key: ${{ runner.os }}-${{ steps.get-os-version.outputs.release }}_geant4_${{ env.GEANT4_VERSION }}_itk_${{ env.ITK_VERSION }}_build
        restore-keys: ${{ runner.os }}-${{ steps.get-os-version.outputs.release }}_geant4_${{ env.GEANT4_VERSION }}_itk_${{ env.ITK_VERSION }}_build
    - name: Create opengate_core_novis Wheel Linux
      run: |
          if [ ${{ matrix.python-version }} == "3.10" ]; then
            export PYTHONFOLDER="cp310-cp310"
          elif [ ${{ matrix.python-version }} == "3.11" ]; then
            export PYTHONFOLDER="cp311-cp311"
          elif [ ${{ matrix.python-version }} == "3.12" ]; then
            export PYTHONFOLDER="cp312-cp312"
          elif [ ${{ matrix.python-version }} == "3.13" ]; then
            export PYTHONFOLDER="cp313-cp313"
          elif [ ${{ matrix.python-version }} == "3.14" ]; then
            export PYTHONFOLDER="cp314-cp314"
          fi
          mkdir -p $HOME/software
          docker run --rm -e "PYTHONFOLDER=${PYTHONFOLDER}" -v $GITHUB_WORKSPACE:/home tbaudier/opengate_core:${{ env.GEANT4_VERSION }}_novis /home/.github/workflows/createWheelLinux_novis.sh
          ls wheelhouse
          rm -rf dist
          mv wheelhouse dist
          sudo chown -R runner:docker dist
    - name: Upload wheels
      uses: actions/upload-artifact@v7
      with:
        name: dist-${{ matrix.os }}-${{ matrix.python-version }}-opengate-core-novis
        path: dist/

  publish_wheel:
    runs-on: ubuntu-24.04
    needs: [build_opengate_wheel, build_opengate_core_wheel_pr, build_opengate_core_wheel_ci_or_tag, build_opengate_core_novis_wheel]
    steps:
    - name: Checkout github repo
      uses: actions/checkout@v6
    - uses: actions/download-artifact@v8
      with:
        pattern: dist-*
        merge-multiple: true
        path: dist/
    - name: Separate the wheels
      run: |
          mkdir dist_opengate_core dist_opengate dist_opengate_core_novis
          mv dist/opengate_core_novis-* dist_opengate_core_novis/ || true
          mv dist/opengate_core_ci* dist_opengate_core/ || true
          mv dist/opengate_core-* dist_opengate_core/
          mv dist/opengate-* dist_opengate/
    - name: Publish to PyPI opengate_core_novis
      if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/')
      uses: pypa/gh-action-pypi-publish@release/v1
      with:
        user: __token__
        password: ${{ secrets.PYPI_OPENGATE_CORE_NOVIS }}
        packages-dir: dist_opengate_core_novis/
        skip-existing: true
    - name: Publish to PyPI opengate_core
      if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/')
      uses: pypa/gh-action-pypi-publish@release/v1
      with:
        user: __token__
        password: ${{ secrets.PYPI_OPENGATE_CORE }}
        packages-dir: dist_opengate_core/
        skip-existing: true
    - name: Publish to PyPI opengate
      if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/')
      uses: pypa/gh-action-pypi-publish@release/v1
      with:
        user: __token__
        password: ${{ secrets.PYPI_OPENGATE }}
        packages-dir: dist_opengate/
        skip-existing: true

#  ssh_session:
#    env:
#      GEANT4_VERSION: 'v11.4.2'
#      ITK_VERSION: 'v5.4.4'
#    runs-on: macos-13
#    steps:
#    - name: Checkout github repo
#      uses: actions/checkout@v6
#    - name: Checkout submodules
#      shell: bash -l {0}
#      run: |
#        export GIT_SSL_NO_VERIFY=1
#        git submodule update --init --recursive
#    - name: Set up Python
#      uses: actions/setup-python@v6
#      with:
#        python-version: 3.9
#        architecture: 'x64'
#    - name: Get OS version
#      id: get-os-version
#      shell: bash -l {0}
#      run: |
#        varOS=`sw_vers | grep "ProductVersion:"`
#        varOS="${varOS#*:}"
#        echo "release=${varOS:1}" >> $GITHUB_OUTPUT
#    - name: Cache modules
#      id: cache_opengate_core_dependencies
#      uses: actions/cache@v4
#      with:
#        path: ~/software
#        key: ${{ runner.os }}-${{ steps.get-os-version.outputs.release }}_geant4_${{ env.GEANT4_VERSION }}_itk_${{ env.ITK_VERSION }}_build
#        restore-keys: ${{ runner.os }}-${{ steps.get-os-version.outputs.release }}_geant4_${{ env.GEANT4_VERSION }}_itk_${{ env.ITK_VERSION }}_build
#    - uses: conda-incubator/setup-miniconda@v3
#      with:
#          miniconda-version: "latest"
#          auto-update-conda: true
#          activate-environment: opengate_core
#          python-version: 3.9
#    - name: Set up Homebrew
#      id: set-up-homebrew
#      uses: Homebrew/actions/setup-homebrew@master
#    - name: Start SSH session
#      uses: luchihoratiu/debug-via-ssh@main
#      with:
#        NGROK_AUTH_TOKEN: ${{ secrets.NGROK_AUTH_TOKEN }}
#        SSH_PASS: ${{ secrets.SSH_PASS }}

  test_wheel_pr:
    runs-on: ${{ matrix.os }}
    needs: [build_opengate_wheel, build_opengate_core_wheel_pr]
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-24.04, macos-15, windows-2025]
        python-version: ['3.10', '3.11', '3.12', '3.13', '3.14']
        exclude:
          - os: macos-15
            python-version: '3.10'
          - os: windows-2025
            python-version: '3.10'
    steps:
    - name: Checkout github repo
      uses: actions/checkout@v6
    - uses: ./.github/workflows/actions_tests

  publish_test:
    runs-on: ubuntu-24.04
    if: ${{ (always()) && (github.ref == 'refs/heads/master') }}
    needs: [test_wheel_pr]
    steps:
    - name: Checkout github repo
      uses: actions/checkout@v6
    - uses: actions/download-artifact@v8
      with:
        pattern: results_json-*
        merge-multiple: true
        path: ./
    - uses: conda-incubator/setup-miniconda@v3
      with:
          miniconda-version: "latest"
          auto-update-conda: true
          activate-environment: vega-altair
          python-version: '3.10'
    - name: Merge the results
      shell: bash -el {0}
      run: |
          git clone https://github.com/OpenGATE/opengate_tests_results.git
          cd opengate_tests_results
          echo $pwd
          ls ..
          cp ../dashboard_output_*.json .
          conda install -c conda-forge altair-all
          pip install pandas numpy
          python compile_opengate_tests_results.py
    - name: Pushes to another repository
      continue-on-error: true
      uses: cpina/github-action-push-to-another-repository@main
      env:
          API_TOKEN_GITHUB: ${{ secrets.PUSH_OPENGATE_TESTS_RESULTS }}
      with:
          source-directory: 'opengate_tests_results'
          destination-github-username: 'OpenGATE'
          destination-repository-name: 'opengate_tests_results'
          user-email: tbaudier@creatis.insa-lyon.fr
          target-branch: master