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NAMESPACE
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103 lines (102 loc) · 2.74 KB
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# Generated by roxygen2: do not edit by hand
export("%>%")
export(.find_shared_scion_matrixes)
export(.load_scion_matrixes)
export(load_differential_analysis)
export(load_summary_stats)
export(metab_only_list)
export(ome_available_list)
export(plot_cluster_enrichment)
export(plot_cmeans)
export(plot_enrich_heatmap)
export(plot_feature_heatmap)
export(plot_precovid_cca)
export(plot_precovid_pca)
export(plot_single_feature)
export(run_ORA)
export(run_SCION)
export(run_cameraPR)
export(run_cluster_ORA)
export(run_cluster_cameraPR)
export(run_cmeans)
export(scion_run_cmeans)
export(tissue_available_list)
import(ComplexHeatmap)
import(ggplot2)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,exprs)
importFrom(Mfuzz,Dmin)
importFrom(Mfuzz,mestimate)
importFrom(Mfuzz,mfuzz)
importFrom(MotrpacBicQC,dl_read_gcp)
importFrom(data.table,":=")
importFrom(data.table,as.data.table)
importFrom(data.table,copy)
importFrom(data.table,data.table)
importFrom(data.table,rbindlist)
importFrom(data.table,setDF)
importFrom(data.table,setDT)
importFrom(data.table,setcolorder)
importFrom(data.table,setkeyv)
importFrom(data.table,setorderv)
importFrom(dplyr,"%>%")
importFrom(dplyr,across)
importFrom(dplyr,all_of)
importFrom(dplyr,any_of)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,c_across)
importFrom(dplyr,case_when)
importFrom(dplyr,contains)
importFrom(dplyr,count)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,if_else)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,right_join)
importFrom(dplyr,select)
importFrom(dplyr,slice_min)
importFrom(dplyr,where)
importFrom(ggplot2,ggplot)
importFrom(ggpubr,annotate_figure)
importFrom(ggpubr,ggarrange)
importFrom(grDevices,cairo_pdf)
importFrom(grDevices,dev.off)
importFrom(grid,convertHeight)
importFrom(grid,convertUnit)
importFrom(grid,convertWidth)
importFrom(grid,gpar)
importFrom(grid,grid.text)
importFrom(grid,grobHeight)
importFrom(grid,grobWidth)
importFrom(grid,textGrob)
importFrom(grid,unit)
importFrom(latex2exp,TeX)
importFrom(magrittr,"%>%")
importFrom(scales,label_number)
importFrom(stats,as.dist)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,hclust)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stringr,str_c)
importFrom(stringr,str_extract)
importFrom(stringr,str_to_sentence)
importFrom(tibble,column_to_rownames)
importFrom(tibble,deframe)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,nest)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,unnest)
importFrom(utils,data)
importFrom(utils,modifyList)