process.yml

name: Process data

on:
  push:
    branches:
      - main

jobs:
  commit-to-main:
    runs-on: ubuntu-latest

    steps:
      # Checkout the repository
      - name: Checkout code
        uses: actions/checkout@v3
        with:
          token: ${{ secrets.GITHUB_TOKEN }}
          fetch-depth: 0 # Ensure full history is available for commits

      - name: Set up Miniconda
        uses: conda-incubator/setup-miniconda@v2
        with:
          auto-update-conda: true
          environment-file: environment.yml
          activate-environment: baby_1l_run_12

      - name: Run neutronics model
        shell: bash -l {0}
        working-directory: analysis/neutron
        run: |
          python openmc_model.py
          jupyter-nbconvert --to notebook postprocessing.ipynb --execute

      - name: Run tritium model
        shell: bash -l {0}
        working-directory: analysis/tritium
        run: |
          python tritium_model.py
          jupyter-nbconvert --to notebook tritium_model.ipynb --execute

      - name: Commit and Push Changes
        run: |
          git config user.name "GitHub Actions Bot"
          git config user.email "actions@github.com"
          git add data/processed_data.json
          git commit -m "Automated data processing ${date}"
          git push origin main