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<!DOCTYPE html>
<html lang="en" data-content_root="./">
<head>
<meta charset="utf-8" />
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<title>syGlass Developer API — syglass 0.18.dev0 documentation</title>
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<section id="syglass-developer-api">
<h1>syGlass Developer API<a class="headerlink" href="#syglass-developer-api" title="Link to this heading">¶</a></h1>
<p>The Python module <code class="docutils literal notranslate"><span class="pre">syglass</span></code> allows scientists and developers alike to create powerful custom workflows to leverage their <a class="reference external" href="https://www.syglass.io/">syGlass</a> image volumes and annotations.</p>
<p>Here you’ll find detailed examples and documentation to help get you started.</p>
<section id="content-overview">
<h2>Content Overview<a class="headerlink" href="#content-overview" title="Link to this heading">¶</a></h2>
<div class="toctree-wrapper compound">
<ul>
<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a><ul>
<li class="toctree-l2"><a class="reference internal" href="installation.html#installing">Installing</a></li>
<li class="toctree-l2"><a class="reference internal" href="installation.html#uninstalling">Uninstalling</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="examples.html">Usage Examples</a><ul>
<li class="toctree-l2"><a class="reference internal" href="examples.html#volumetric-data">Volumetric Data</a><ul>
<li class="toctree-l3"><a class="reference internal" href="examples.html#creating-a-project">Creating a Project</a></li>
<li class="toctree-l3"><a class="reference internal" href="examples.html#adding-mask-data-to-projects">Adding Mask Data to Projects</a></li>
<li class="toctree-l3"><a class="reference internal" href="examples.html#traversing-the-volume">Traversing the Volume</a></li>
<li class="toctree-l3"><a class="reference internal" href="examples.html#retrieving-volumetric-data-around-points">Retrieving Volumetric Data Around Points</a></li>
<li class="toctree-l3"><a class="reference internal" href="examples.html#retrieving-mask-data">Retrieving Mask Data</a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="examples.html#counting">Counting</a><ul>
<li class="toctree-l3"><a class="reference internal" href="examples.html#changing-colors-of-counting-points">Changing Colors of Counting Points</a></li>
<li class="toctree-l3"><a class="reference internal" href="examples.html#get-and-set-the-multi-tracking-points-for-a-project">Get and Set the Multi-tracking Points for a Project</a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="examples.html#tracings-swcs">Tracings (SWCs)</a><ul>
<li class="toctree-l3"><a class="reference internal" href="examples.html#importing-swc-files">Importing SWC Files</a></li>
<li class="toctree-l3"><a class="reference internal" href="examples.html#export-and-analyze">Export and Analyze</a></li>
</ul>
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<li class="toctree-l2"><a class="reference internal" href="examples.html#meshes-obj">Meshes (OBJ)</a><ul>
<li class="toctree-l3"><a class="reference internal" href="examples.html#import">Import</a></li>
</ul>
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<li class="toctree-l2"><a class="reference internal" href="examples.html#rois">ROIs</a><ul>
<li class="toctree-l3"><a class="reference internal" href="examples.html#importing-and-exporting-roi-data">Importing and Exporting ROI Data</a></li>
</ul>
</li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="faqs.html">FAQs</a></li>
</ul>
</div>
</section>
<section id="detailed-documentation">
<h2>Detailed Documentation<a class="headerlink" href="#detailed-documentation" title="Link to this heading">¶</a></h2>
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<li class="toctree-l1"><a class="reference internal" href="modules.html">syglass</a><ul>
<li class="toctree-l2"><a class="reference internal" href="syglass.html">syglass package</a><ul>
<li class="toctree-l3"><a class="reference internal" href="syglass.html#module-syglass">Module contents</a></li>
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<li><p><a class="reference internal" href="genindex.html"><span class="std std-ref">Index</span></a></p></li>
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<li class="toctree-l1"><a class="reference internal" href="examples.html">Usage Examples</a></li>
<li class="toctree-l1"><a class="reference internal" href="faqs.html">FAQs</a></li>
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<h3>Related Topics</h3>
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