InsightJournalTemplate/pixi.toml at main · InsightSoftwareConsortium/InsightJournalTemplate · GitHub

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[workspace]
name = "insight-journal-template"
description = "A template for open science article submissions to the Insight Journal using MyST Markdown"
channels = ["conda-forge"]
platforms = ["linux-64", "osx-arm64", "win-64"]

[dependencies]
# MyST ecosystem
mystmd = ">=1.8.0,<2"
jupyter-book = "*"

# Python scientific stack
python = ">=3.11"
numpy = "*"
matplotlib = "*"
scipy = "*"

# Development tools
jupyterlab = "*"

# Optional: for notebook execution
ipykernel = "*"

# Build manuscript PDF
typst = ">=0.13.1,<0.14"

[pypi-dependencies]
# ITK Python Package
itk = "*"

[tasks]
build-html = "myst build --html"
# Does not require a LaTeX installation
build-pdf = "myst build --typst"
# Requires a LaTeX installation
build-arxiv = "myst build --pdf"
build-tex = "myst build --tex"
build-docx = "myst build --docx"
build-cff = "myst build --cff"

# Combined tasks
build-manuscript = { depends-on = ["build-html", "build-pdf", "build-cff"] }
build-pdfs = { depends-on = ["build-pdf", "build-arxiv"] }
build-meca = { cmd = "myst build --meca", depends-on = ["build-html", "build-pdfs", "build-tex", "build-docx", "build-cff"] }

# Verify MECA bundle reproducibility
verify-meca = { cmd = '''
  myst build --meca &&
  rm -rf exports/article.meca &&
  unzip exports/article.meca.zip -d exports/article.meca &&
  cd exports/article.meca/bundle &&
  pixi run build &&
  pixi run test
''', depends-on = ["build-meca"], description = "Build MECA export and verify bundle reproducibility" }

# Start development server
start = "myst start"
# Alias
dev = { depends-on = ["serve"] }

# Clean build artifacts
clean = "myst clean"

# Aggregate, standard build task
build = { depends-on = ["build-manuscript", "test-src"] }

[feature.cxx.dependencies]
cmake = "*"
make = "*"
ninja = "*"

[feature.cxx.tasks.clone-itk]
cmd = ["stat", "build/ITK", ">/dev/null", "||",
  "git", "clone",
    "https://github.com/InsightSoftwareConsortium/ITK",
    "build/ITK"]
outputs = ["build/ITK/LICENSE"]
description = "Fetch ITK's source code"

[feature.cxx.tasks.configure-itk]
cmd = '''cmake -Bbuild/ITK-build -Sbuild/ITK -GNinja
  -DBUILD_EXAMPLES:BOOL=OFF
  -DBUILD_TESTING:BOOL=OFF'''
depends-on = ["clone-itk"]
outputs = ["build/ITK-build/CMakeFiles/**"]
description = "Configure ITK"

[feature.cxx.tasks.build-itk]
cmd = "cmake --build build/ITK-build"
depends-on = ["configure-itk"]
outputs = ["build/ITK-build/**"]
description = "Build ITK"

[feature.cxx.tasks.configure-project]
cmd = '''cmake -Bbuild/project-build -Ssrc -GNinja
 -DITK_DIR=$(pwd)/build/ITK-build'''
depends-on = ["build-itk"]
outputs = ["build/project-build/CMakeFiles/**"]
description = "Configure the project"

[feature.cxx.tasks.build-src]
cmd = "cmake --build build/project-build"
depends-on = ["configure-project"]
outputs = ["build/project-build/**"]
description = "Build the project"

[feature.cxx.tasks.test-src]
cmd = "cd build/project-build && ctest"
depends-on = ["build-src"]
description = "Test the project"

[environments]
default = { features = [], solve-group = "default" }
cxx = { features = ["cxx"], solve-group = "default" }