From dae36ff8d1d9296279827c01b75b6ac4496c519d Mon Sep 17 00:00:00 2001 From: sursiak Date: Fri, 27 Jun 2025 14:48:51 +0800 Subject: [PATCH 1/4] Create .Rhistory --- .Rhistory | 5 +++++ 1 file changed, 5 insertions(+) create mode 100644 .Rhistory diff --git a/.Rhistory b/.Rhistory new file mode 100644 index 0000000..b435cd4 --- /dev/null +++ b/.Rhistory @@ -0,0 +1,5 @@ +git clone https://github.com/Illumina/SpliceAI.git +git clone https://github.com/Illumina/SpliceAI.git +https://github.com/Illumina/SpliceAI.git +cd SpliceAI +spliceai -I input.vcf -O output.vcf -R genome.fa -A grch37 From 59b9c27c2112636259d1fdf068110237db41e3fd Mon Sep 17 00:00:00 2001 From: sursiak Date: Fri, 27 Jun 2025 14:55:19 +0800 Subject: [PATCH 2/4] Update .Rhistory --- .Rhistory | 6 +----- 1 file changed, 1 insertion(+), 5 deletions(-) diff --git a/.Rhistory b/.Rhistory index b435cd4..d79b4be 100644 --- a/.Rhistory +++ b/.Rhistory @@ -1,5 +1 @@ -git clone https://github.com/Illumina/SpliceAI.git -git clone https://github.com/Illumina/SpliceAI.git -https://github.com/Illumina/SpliceAI.git -cd SpliceAI -spliceai -I input.vcf -O output.vcf -R genome.fa -A grch37 +from pkg_resources import resource_filename From 1da70d203233298ac9a0ee9f40d031295e370473 Mon Sep 17 00:00:00 2001 From: sursiak Date: Fri, 27 Jun 2025 14:59:47 +0800 Subject: [PATCH 3/4] Update .Rhistory --- .Rhistory | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/.Rhistory b/.Rhistory index d79b4be..1ea7236 100644 --- a/.Rhistory +++ b/.Rhistory @@ -1 +1,6 @@ from pkg_resources import resource_filename +reticulate::repl_python() +import io +pip install tensorflow +conda install tensorflow +conda install tensorflow From ac7d0b83be53c00e5a6b6a3a43e1603d2dd4d077 Mon Sep 17 00:00:00 2001 From: sursiak Date: Fri, 27 Jun 2025 15:35:54 +0800 Subject: [PATCH 4/4] Update .Rhistory conda create -n spliceai python=3.8 --- .Rhistory | 1 + 1 file changed, 1 insertion(+) diff --git a/.Rhistory b/.Rhistory index 1ea7236..9c65738 100644 --- a/.Rhistory +++ b/.Rhistory @@ -4,3 +4,4 @@ import io pip install tensorflow conda install tensorflow conda install tensorflow +reticulate::repl_python()