created docs for sections of the tutorial

kaseylove · kaseylove · commit 3ec0cb6fd6d0 · 2026-01-27T09:35:06.000-05:00
diff --git a/docs/index.rst b/docs/index.rst
@@ -3,27 +3,14 @@
    You can adapt this file completely to your liking, but it should at least
    contain the root `toctree` directive.
 
-rushd: maintaining robust, reproducible data management
-========================================================
+``rushd``: robust, reproducible data management
+===========================================================
 
 .. toctree::
    :maxdepth: 2
    :caption: Contents
 
    Tutorials <tutorial/index>
-
-.. toctree::
-   :maxdepth: 2
-   :caption: Reference
-
    API <api/rushd.rst>
 
-
-
-
-Indices and tables
-==================
-
-* :ref:`genindex`
-* :ref:`modindex`
-* :ref:`search`
+* :ref:`search`
diff --git a/docs/tutorial/ddpcr/index.rst b/docs/tutorial/ddpcr/index.rst
@@ -0,0 +1,9 @@
+============================
+Droplet digital PCR (ddPCR)
+============================
+
+.. toctree::
+   :maxdepth: 1
+   :glob:
+   
+   *
diff --git a/docs/tutorial/flow/index.rst b/docs/tutorial/flow/index.rst
@@ -0,0 +1,9 @@
+==============
+Flow cytometry
+==============
+
+.. toctree::
+   :maxdepth: 1
+   :glob:
+   
+   *
diff --git a/docs/tutorial/index.rst b/docs/tutorial/index.rst
@@ -3,6 +3,12 @@ Tutorials
 
 .. toctree::
    :maxdepth: 2
+   :glob:
+   
+   overview/index
+   flow/index
+   qpcr/index
+   ddpcr/index
+   plotting/index
 
-   plot_well_metadata
-   generate_xticklabels
+   */index
diff --git a/docs/tutorial/overview/index.rst b/docs/tutorial/overview/index.rst
@@ -0,0 +1,9 @@
+============================
+Overview of ``rushd``
+============================
+
+.. toctree::
+   :maxdepth: 1
+   :glob:
+   
+   *
diff --git a/docs/tutorial/overview/plot_well_metadata.rst b/docs/tutorial/overview/plot_well_metadata.rst
diff --git a/docs/tutorial/plot/generate_xticklabels.rst b/docs/tutorial/plot/generate_xticklabels.rst
diff --git a/docs/tutorial/plot/index.rst b/docs/tutorial/plot/index.rst
@@ -0,0 +1,9 @@
+============================
+Plotting
+============================
+
+.. toctree::
+   :maxdepth: 1
+   :glob:
+   
+   *
diff --git a/docs/tutorial/qpcr/index.rst b/docs/tutorial/qpcr/index.rst
@@ -0,0 +1,9 @@
+============================
+qPCR
+============================
+
+.. toctree::
+   :maxdepth: 1
+   :glob:
+   
+   *
