Bump version of CoreMS

Author: kheal

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 3.3.1
+current_version = 3.3.2
 commit = False
 tag = False
 

.bumpversion_lcmsmetab.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 1.1.1
+current_version = 1.1.2
 commit = False
 tag = False
 

.bumpversion_lipid.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 1.3.1
+current_version = 1.3.2
 commit = False
 tag = False
 

Dockerfile

@@ -21,7 +21,7 @@ COPY metaMS/ /metams/metaMS/
 COPY README.md disclaimer.txt Makefile requirements.txt setup.py /metams/
 
 # Install the correct version of CoreMS from github
-RUN pip install git+https://github.com/EMSL-Computing/[email protected].1
+RUN pip install git+https://github.com/EMSL-Computing/[email protected].2
 
 # Install the MetaMS package in editable mode
 RUN pip3 install --editable .

MAINTAINERS.md

@@ -45,9 +45,9 @@ To test a workflow before an associated docker image is pushed, you can run the
 The following steps should be followed in order
 
 ### Bump Version Numbers
-The versioning of the repo, docker image and the GC/MS workflow are currently 3.3.1.
-The version of the lipid workflow is currently 1.3.1.
-The version of the LCMS metabolomics workflow is currently 1.1.1.
+The versioning of the repo, docker image and the GC/MS workflow are currently 3.3.2.
+The version of the lipid workflow is currently 1.3.2.
+The version of the LCMS metabolomics workflow is currently 1.1.2.
 
 To bump the repo *and all workflows*, run one of the following commands.  This will update the runtime version of all of the workflows, the version of the repo and the version of the docker image.
 

README.md

@@ -10,7 +10,7 @@
 
 ## Current Version
 
-### `3.3.1`
+### `3.3.2`
 
 ## Available Workflows
 

docs/gcms_metabolomics/README_GCMS.md

@@ -20,7 +20,7 @@
 
 ## Current Version
 
-### `3.3.1`
+### `3.3.2`
 
 ### Data input formats
 

docs/gcms_metabolomics/index.rst

@@ -96,7 +96,7 @@ Outputs
 Version History
 ---------------
 
-- Current version is 3.3.1
+- Current version is 3.3.2
 
 Point of contact
 ----------------

docs/lcms_lipidomics/README_LCMS_LIPID.md

@@ -2,7 +2,7 @@ github_url
 
 :   <https://github.com/microbiomedata/metaMS/blob/master/docs/index_lipid.rst>
 
-# Lipidomics Workflow (v1.3.1)
+# Lipidomics Workflow (v1.3.2)
 
 ![](lipid_workflow_v1.svg)
 
@@ -128,7 +128,7 @@ The following inputs are required (declared in the input json file):
 
 ## Version History
 
--   v1.3.1: Current release
+-   v1.3.2: Current release
 -   v1.0.0: Initial release of the lipidomics workflow Jan 9, 2025
 
 ## Point of contact

docs/lcms_lipidomics/index.html

@@ -5,7 +5,7 @@
 href="https://github.com/microbiomedata/metaMS/blob/master/docs/index_lipid.rst">https://github.com/microbiomedata/metaMS/blob/master/docs/index_lipid.rst</a></p>
 </dd>
 </dl>
-<h1 id="lipidomics-workflow-v1.3.1">Lipidomics Workflow (v1.3.1)</h1>
+<h1 id="lipidomics-workflow-v1.3.2">Lipidomics Workflow (v1.3.2)</h1>
 <figure>
 <img src="lipid_workflow_v1.svg" alt="lipid_workflow_v1.svg" />
 </figure>
@@ -126,7 +126,7 @@ <h3 id="outputs">Outputs</h3>
 </ul>
 <h2 id="version-history">Version History</h2>
 <ul>
-<li>v1.3.1: Current release</li>
+<li>v1.3.2: Current release</li>
 <li>v1.0.0: Initial release of the lipidomics workflow Jan 9, 2025</li>
 </ul>
 <h2 id="point-of-contact">Point of contact</h2>