I am running portcullis full with --orientation F and i get the following error:
../lib/include/portcullis/bam/bam_master.hpp(193): Throw in function const portcullis::bam::Orientation portcullis::bam::orientationFromString(std::string&)
Dynamic exception type: boost::wrapexcept<portcullis::bam::BamException>
std::exception::what: std::exception
[portcullis::bam::BamError*] = Unknown orientation: F
This is for a single-end sample. I am also running with --strandedness unstranded. When I run on a paired-end sample with--orientation FR it works.
i am using version 1.2.4
I am running
portcullis fullwith--orientation Fand i get the following error:This is for a single-end sample. I am also running with
--strandedness unstranded. When I run on a paired-end sample with--orientation FRit works.i am using version 1.2.4