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--orientation F not accepted #67

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@anoronh4

I am running portcullis full with --orientation F and i get the following error:

../lib/include/portcullis/bam/bam_master.hpp(193): Throw in function const portcullis::bam::Orientation portcullis::bam::orientationFromString(std::string&)
Dynamic exception type: boost::wrapexcept<portcullis::bam::BamException>
std::exception::what: std::exception
[portcullis::bam::BamError*] = Unknown orientation: F

This is for a single-end sample. I am also running with --strandedness unstranded. When I run on a paired-end sample with--orientation FR it works.

i am using version 1.2.4

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