added submodules and updated README

hannespetur · hannespetur · commit c284487b083a · 2026-04-17T14:39:04.000Z
diff --git a/README.md b/README.md
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 # weaver
 
-*Source code is available upon request and will be made publicly available prior to publication*
-
 Weaver is a short read mapper for pangenome references. Weaver supports both linear (FASTA) and graphs (rGFA) inputs and additionally uses small variants in a supplementary VCF file. It is designed to reduce reference bias in variant calling while being a simple drop-in replacement for linear reference mappers.
 
 ## Getting started
diff --git a/submodules/catch b/submodules/catch
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+Subproject commit 10f62484bff73e3a58a411e2e10b4e1c13cfba9f
diff --git a/submodules/cereal b/submodules/cereal
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+Subproject commit 22a1b369f39be918ca79206a83c4facd759f9105
diff --git a/submodules/gfatools b/submodules/gfatools
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+Subproject commit 39c54d5dfe4678d4cfb75b37bd27d4fb21f4de72
diff --git a/submodules/htslib b/submodules/htslib
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+Subproject commit cb88c90b4620bf4c910b9c3b60e9738c48b09ddb
diff --git a/submodules/libdeflate b/submodules/libdeflate
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+Subproject commit 28e88e9c6f6c197594753e7c9139e8a70c1a7b89
diff --git a/submodules/parallel-hashmap b/submodules/parallel-hashmap
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+Subproject commit 01c838b76a4f21024e478ef020c3386b9b4ba4d2
diff --git a/submodules/paw b/submodules/paw
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+Subproject commit 276af8889e6334ef5a7f0ea8508ce4d93d5b54e1
