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Update plm function to return first derivative with associated argume… #57

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Update plm function to return first derivative with associated argume…

Update plm function to return first derivative with associated argume… #57

Workflow file for this run

.github/workflows/ci.yml at 59405db
name: CI Pipeline
on:
push:
branches:
- main
- develop
pull_request:
branches:
- '**'
jobs:
build-env:
name: Build Conda Environment
runs-on: ubuntu-latest
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Set up Miniconda
uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: lenapy_env
environment-file: environment.yml
auto-activate-base: false
- name: Cache Conda environment
uses: actions/cache@v4
with:
path: /usr/share/miniconda/envs/lenapy_env
key: conda-${{ runner.os }}-${{ hashFiles('environment.yml') }}
restore-keys: |
conda-${{ runner.os }}-
formater:
name: Code Formatting Check
runs-on: ubuntu-latest
needs: build-env
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Install Dependencies
shell: bash -l {0}
run: pip install -e .[formatter]
- name: Run Black & Isort
run: |
black --check --diff lenapy
isort lenapy --check --diff
pytest:
name: Run Pytest
runs-on: ubuntu-latest
needs: build-env
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Set up Miniconda
uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: false
activate-environment: lenapy_env
- name: Restore Conda environment
uses: actions/cache@v4
with:
path: /usr/share/miniconda/envs/lenapy_env
key: conda-${{ runner.os }}-${{ hashFiles('environment.yml') }}
- name: Run Pytest with Coverage
shell: bash -l {0}
run: |
pip install -e .[test]
pytest -s tests --cov=lenapy --cov-report=xml:.ci-reports/coverage.xml --cov-report html:cov_html --cov-report=term --junitxml=pytest-results.xml
- name: Upload Coverage Report
uses: actions/upload-artifact@v4
with:
name: coverage-report
path: |
.ci-reports/
cov_html/
pytest-results.xml
- name: Publish test results
uses: EnricoMi/publish-unit-test-result-action@v2
with:
files: pytest-results.xml
test_notebooks:
name: Test Jupyter Notebooks
runs-on: ubuntu-latest
needs: build-env
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Set up Miniconda
uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: false
activate-environment: lenapy_env
- name: Restore Conda environment
uses: actions/cache@v4
with:
path: /usr/share/miniconda/envs/lenapy_env
key: conda-${{ runner.os }}-${{ hashFiles('environment.yml') }}
- name: Install Notebook Dependencies
shell: bash -l {0}
run: |
pip install -e .[test]
pip install -e .[notebook]
- name: Run Pytest on Notebooks
shell: bash -l {0}
run: |
pytest --nbmake --nbmake-kernel=python3 doc/tutorials/
pylint_analysis:
name: Pylint Code Analysis
runs-on: ubuntu-latest
needs: build-env
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Install Dependencies
shell: bash -l {0}
run: pip install -e .[quality]
- name: Run Pylint
shell: bash -l {0}
run: |
pylint --recursive=y --disable=all --fail-under=10 --enable=too-many-statements,too-many-nested-blocks lenapy
mccabe_analysis:
name: McCabe Complexity Analysis
runs-on: ubuntu-latest
needs: build-env
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Set up Conda
uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: lenapy
auto-activate-base: false
- name: Install Quality Tools
shell: bash -l {0}
run: pip install .[quality]
- name: Run McCabe Complexity Check
shell: bash -l {0}
run: ./continuous_integration/scripts/check_mccabe_complexity.sh 25 lenapy lenapy/readers/ocean.py lenapy/plots/plotting.py
build_doc:
name: Build sphinx documentation
runs-on: ubuntu-latest
needs: build-env
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Set up Miniconda
uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: false
activate-environment: lenapy_env
- name: Restore Conda environment
uses: actions/cache@v4
with:
path: /usr/share/miniconda/envs/lenapy_env
key: conda-${{ runner.os }}-${{ hashFiles('environment.yml') }}
- name: Install documentation dependencies
shell: bash -l {0}
run: pip install .[doc]
- name: Build doc
shell: bash -l {0}
run: |
conda install pandoc
sphinx-build -b html doc doc/build
- name: Upload doc as artefact
uses: actions/upload-artifact@v4
with:
name: doc-build
path: |
doc/build
retention-days: 7